SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing WP_093428194.1 NCBI__GCF_900112605.1:WP_093428194.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 20 (the maximum) hits to proteins with known functional sites (download)

P00903 Aminodeoxychorismate synthase component 2; ADC synthase; ADCS; 4-amino-4-deoxychorismate synthase component 2; Aminodeoxychorismate synthase, glutamine amidotransferase component; EC 2.6.1.85 from Escherichia coli (strain K12) (see paper)
63% identity, 95% coverage: 1:189/198 of query aligns to 1:185/187 of P00903

query
sites
P00903

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C79 (= C79) mutation to S: 10000-fold decrease in catalytic efficiency.
H168 (= H172) mutation to Q: Loss of activity.
E170 (= E174) mutation to A: 150-fold decrease in catalytic efficiency.; mutation to D: 4-fold decrease in catalytic efficiency.; mutation E->K,Q: Loss of activity.

Q42565 Anthranilate synthase beta subunit 1, chloroplastic; Anthranilate synthase component 2-1; Anthranilate synthase, glutamine amidotransferase component 2-1; Protein TRYPTOPHAN BIOSYNTHESIS 4; Protein WEAK ETHYLENE INSENSITIVE 7; EC 4.1.3.27 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
51% identity, 96% coverage: 2:191/198 of query aligns to 75:266/276 of Q42565

query
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Q42565

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G150 (= G77) mutation to D: In trp4-1; no visible phenotype under normal growth conditions.
G176 (= G102) mutation to E: In wei7-2; insensitive to inhibition of root elongation by ethylene.

P00900 Anthranilate synthase component 2; AS; ASII; Anthranilate synthase, GATase component; Anthranilate synthase, glutamine amidotransferase component; EC 4.1.3.27 from Serratia marcescens (see 3 papers)
46% identity, 96% coverage: 2:191/198 of query aligns to 4:189/193 of P00900

query
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P00900

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C84 (= C79) active site, Nucleophile; for GATase activity

Sites not aligning to the query:

1 modified: Initiator methionine, Removed

1i7qB Anthranilate synthase from s. Marcescens (see paper)
45% identity, 96% coverage: 2:191/198 of query aligns to 3:188/192 of 1i7qB

query
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1i7qB

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active site: G58 (≠ C54), C83 (= C79), L84 (= L80), H169 (= H172), E171 (= E174)
binding glutamic acid: P55 (= P51), G56 (= G52), G58 (≠ C54), C83 (= C79), L84 (= L80), Q87 (= Q83), H132 (= H128), S133 (= S129), L134 (= L130)

8hx8A Crystal structure of 4-amino-4-deoxychorismate synthase from streptomyces venezuelae co-crystallized with chorismate (see paper)
46% identity, 93% coverage: 4:188/198 of query aligns to 8:187/673 of 8hx8A

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8hx8A

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binding magnesium ion: I175 (= I176), S177 (≠ T178)

Sites not aligning to the query:

binding magnesium ion: 521, 655, 658
binding tryptophan: 231, 232, 233, 241, 243, 458, 459, 460, 614

8hx9A Crystal structure of 4-amino-4-deoxychorismate synthase from streptomyces venezuelae with chorismate (see paper)
36% identity, 93% coverage: 4:188/198 of query aligns to 7:144/632 of 8hx9A

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8hx9A

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binding magnesium ion: S134 (≠ T178), D135 (≠ R179)

Sites not aligning to the query:

binding (3R,4R)-3-[(1-carboxyethenyl)oxy]-4-hydroxycyclohexa-1,5-diene-1-carboxylic acid: 453, 454, 455, 456, 547, 570, 590, 603, 604, 605, 606, 619, 623
binding tryptophan: 189, 190, 191, 199, 201, 419, 420, 421, 574, 575

Q9LVW7 Carbamoyl phosphate synthase small chain, chloroplastic; Carbamoyl phosphate synthetase glutamine chain; Protein VENOSA 6; EC 6.3.5.5 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
28% identity, 86% coverage: 14:183/198 of query aligns to 254:413/430 of Q9LVW7

query
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Q9LVW7

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A

V

A

D

E

E

A

L

L

A

K

A

M

R

N

A

-

P

P

S

D

H

G

I

I

L

L

L

F

S

S

P

N

G

G

P

P

C

G

T

D

P

P

D

S

E

A

A

V

G

P

I

Y

S

A

L

V

E

E

V

T

V

V

R

K

R

E

F

L

A

L

G

G

H

K

T

V

P

P

I

V

L

Y

G

G

V

I

C

C

L

M

G

G

H

H

Q

Q

A

L

I

L

G

G

Q

Q

A

A

F

L

G

G

R

K

V

T

V

F

H

K

A

M

R

K

E

F

V

G

M

H

H

H

G

G

K

G

T

N

S

H

P

P

I

V

H

R

H

N

D

N

E

R

Q

T

G

G

V

Q

F

V

A

E

G

-

L

-

E

-

N

-

P

-

F

-

E

I

A

S

T

A

R

Q

Y

N

H

H

S

N

L

Y

V

A

V

V

A

D

R

P

E

A

G

S

L

L

P

P

T

G

E

G

E

-

L

-

V

V

E

E

T

V

A

T

W

H

T

V

S

N

E

L

A

N

D

D

G

-

G

G

E

S

I

C

M

A

G

G

L

L

R

S

H

F

R

P

R

E

Y

M

T

N

V

V

E

M

G

S

V

L

Q

Q

F

Y

H

H

P

P

E

E

S

A

I

S

L

P

T

G

R

P

H
|
H

G

D

H

S

D

D

H410 (= H180) mutation to Y: In ven6-1; reticulate leaf phenotype.

2ywcA Crystal structure of gmp synthetase from thermus thermophilus in complex with xmp
31% identity, 97% coverage: 1:193/198 of query aligns to 1:185/475 of 2ywcA

query
sites
2ywcA

M

M

L

V

A

L

M

V

I

L

D

D

N

F

Y

G

D

S

S

Q

F

Y

T

T

Y

R

N

L

L

I

V

A

Q

R

Y

R

L

L

G

R

E

E

L

L

G

R

A

A

E

F

V

S

E

L

V

I

F

L

R

P

N

G

D

D

A

A

I

-

T

P

V

L

D

E

E

E

L

V

A

L

A

K

R

H

A

R

P

P

S

Q

H

A

I

L

L

I

L

L

S

S

P

G

G
|
G

P

P

C
x
R

T

S

P

V

D

F

E

D

A

P

G

D

I

A

S

P

L

R

E

P

V

D

V

P

R

R

R

L

F

F

A

S

G

S

H

G

T

L

P

P

I

L

L

L

G

G

V

I

C
|
C

L
x
Y

G

G

H

M

Q

Q

A

L

I

L

G

A

Q

Q

A

E

F

L

G

G

R

R

V

V

V

E

H

R

A

A

R

G

E

R

V

A

M

E

H

Y

G

G

K

K

T

A

S

L

P

L

I

T

H

R

H

H

D

-

E

E

Q

G

G

P

V

L

F

F

A

R

G

G

L

L

E

E

N

G

P

E

F

V

E

Q

A

V

T

W

R

M

Y

S

H

H

S

Q

L

D

V

A

V

V

A

T

R

-

E

-

G

-

L

A

P

P

T

P

E

P

E

G

L

W

V

R

E

V

T

V

A

A

W

E

T

T

S

E

E

E

A

N

D

P

G

V

G

A

E

A

I

I

M

A

G

S

L

P

R

D

H

G

R

R

R

A

Y

Y

T

-

V

-

E

-

G

G

V

V

Q

Q

F

F

H
|
H

P

P

E
|
E

S

V

I

A

L

H

T

T

R

P

H

K

G

G

H

M

D

Q

L

I

L

L

Q

E

N

N

F

F

L

L

A

E

F

L

R

A

G

G

active site: G51 (= G52), R53 (≠ C54), C78 (= C79), Y79 (≠ L80), H164 (= H172), E166 (= E174)

Sites not aligning to the query:

active site: 221, 343
binding xanthosine-5'-monophosphate: 288, 366, 367, 368, 408, 467, 471, 472, 473

7yc6A Crystal structure of d110p mutant of gatase subunit of methanocaldococcus jannaschii gmp synthetase
26% identity, 99% coverage: 1:196/198 of query aligns to 1:182/183 of 7yc6A

query
sites
7yc6A

M

M

L

I

A

V

M

I

I

L

D

D

N

N

Y

G

D

G

S

Q

F

Y

T

V

Y

H

N

R

L

I

V

H

Q

R

Y

S

L

L

G

K

E

Y

L

I

G

G

A

V

E

S

V

S

E

K

V

I

F

V

R

P

N

N

D

T

A

T

I

P

T

L

V

E

D

E

E

I

L

E

A

S

A

N

R

K

A

E

P

V

S

K

H

G

I

I

L

I

L

L

S

S

P

G

G

G

P

P

C

-

T

D

P

I

D

E

E

K

A

A

G

K

I

N

S

C

L

I

E

D

V

I

V

A

R

-

F

L

A

N

G

A

H

K

T

L

P

P

I

I

L

L

G

G

V

I

C
|
C

L

L

G

G

H

H

Q

Q

A

L

I

I

G

A

Q

L

A

A

F

Y

G

G

R

-

V

-

H

-

A

-

R

-

E

E

V

V

M

G

H

R

G

A

K

A

T

L

S

T

P

K

I

V

H

Y

H

V

D
|
D

-

K

E

E

Q

N

G

P

V

L

F

F

A

K

G

N

L

V

E

P

N

R

P

E

F

F

E

N

A

A

T

W

R

A

Y

S

H

H

S

K

L

D

V
x
E

V

V

A

K

R

K

-

V

-

P

E

E

G

G

L

F

P

E

T

I

E

-

L

-

V

-

E

-

T

-

A

-

W

-

T

L

S

A

E
x
H

A

S

D

D

G

I

G
x
C

E

Q

I

V

M

E

G

A

L

M

R

K

H

H

R

K

R

T

Y

K

T

P

V

I

E

Y

G

G

V

V

Q

Q

F

F

H
|
H

P

P

E

E

S

V

I

A

L

H

T

T

R

E

H

Y

G

G

H

N

D

E

L

I

L

L

Q

K

N

N

F

F

L

C

A

K

F

V

R

C

G

G

G

Y

E

K

W

F

binding zinc ion: C76 (= C79), D101 (= D110), E123 (≠ V131), E123 (≠ V131), H136 (≠ E150), C140 (≠ G154), C140 (≠ G154), H158 (= H172)

1gpmA Escherichia coli gmp synthetase complexed with amp and pyrophosphate (see paper)
26% identity, 95% coverage: 2:189/198 of query aligns to 8:196/501 of 1gpmA

query
sites
1gpmA

L

I

A

L

M

I

I

L

D

D

N

F

Y

G

D

S

S

Q

F

Y

T

T

Y

Q

N

L

L

V

V

A

Q

R

Y

R

L

V

G

R

E

E

L

L

G

G

A

V

E

Y

V

C

E

E

V

L

F

W

R

A

N

W

D

D

A

-

I

V

T

T

V

E

D

A

E

Q

L

I

A

R

A

D

R

F

A

N

P

P

S

S

H

G

I

I

L

I

L

L

S

S

P

G

G
|
G

P

P

C

E

T

S

P

T

D

T

E

E

A

E

G

N

I

S

S

P

L

R

E

A

V

P

V

Q

R

Y

R

V

F

F

A

E

G

A

H

G

T

V

P

P

I

V

L

F

G

G

V

V

C
|
C

L
x
Y

G

G

H

M

Q

Q

A

T

I

M

G

A

Q

M

A

Q

F

L

G

G

R

H

V

V

V

E

H

A

A

S

R

N

E

E

V

R

M

E

H

F

G

G

K

Y

T

A

S

Q

P

V

I

E

H

V

D

N

E

D

Q

S

G

A

V

L

F

V

A

R

G

G

L

I

E

E

N

D

P

A

F

L

E

T

A

A

T

D

R

G

Y

K

H

P

S

L

L

L

V

D

V

V

A

W

R

M

E

S

-

H

-

G

-

D

-

K

-

V

-

T

G

A

L

I

P

P

T

S

E

D

E

F

L

I

V

-

E

-

T

T

A

V

W

A

T

S

S

T

E

E

A

S

D

C

G

P

G

F

E

A

I

I

M

M

G

A

L

N

R

E

H

E

R

K

R

R

Y

F

T

Y

V

-

E

-

G

G

V

V

Q

Q

F

F

H
|
H

P

P

E
|
E

S

V

I

T

L

H

T

T

R

R

H

Q

G

G

H

M

D

R

L

M

L

L

Q

E

N

R

F

F

L

V

active site: G57 (= G52), C84 (= C79), Y85 (≠ L80), H179 (= H172), E181 (= E174)

Sites not aligning to the query:

active site: 237, 357
binding adenosine monophosphate: 231, 232, 233, 258, 313
binding pyrophosphate 2-: 233, 235, 236, 237, 238, 357

P08955 Multifunctional protein CAD; Carbamoyl phosphate synthetase 2-aspartate transcarbamylase-dihydroorotase; EC 6.3.5.5; EC 3.5.1.2; EC 6.3.4.16; EC 2.1.3.2; EC 3.5.2.3 from Mesocricetus auratus (Golden hamster) (see paper)
27% identity, 83% coverage: 11:174/198 of query aligns to 185:338/2225 of P08955

query
sites
P08955

F

L

T

K

Y

Y

N

N

L

Q

V

I

Q

R

Y

C

L

L

G

C

E

Q

L

L

G

G

A

A

E

E

V

V

E

T

V

V

F

V

R

P

N

W

D

N

A

-

I

-

T

-

V

-

D

H

E

E

L

L

A

D

A

S

R

Q

A

K

P

Y

S

D

H

G

I

L

L

F

L

L

S

S

P

N

G

G

P

P

C

G

T

D

P

P

D

A

E

S

A

Y

G

P

I

G

S

V

L

V

E

A

V

T

V

L

R

N

R

R

F

V

A

L

G

S

H

E

T

P

-

N

-

P

-

R

P

P

I

V

L

F

G

G

V

I

C

C

L

L

G

G

H

H

Q

Q

A

L

I

L

G

A

Q

L

A

A

F

I

G

G

G

A

R

K

V

T

V

Y

H

K

A

M

R

R

E

Y

V

G

M

N

H

R

G

G

K

-

T

-

S

-

P

-

I

-

H

-

H

H

D

N

E

Q

Q

P

G

C

V

L

F

L

A

V

G

G

L

T

E

G

N

R

P

C

F

F

E

L

A

T

T

S

R

Q

Y

N

H

H

S

G

L

F

V

A

V

V

A

D

R

A

E

D

G

S

L

L

P

P

T

-

E

-

L

-

V

-

E

-

T

A

A

G

W

W

T

T

-

P

-

L

-

F

S

T

E

N

A

A

D

N

G

D

G

C

E

S

I

N

M

E

G

G

L

I

R

V

H

H

R

D

R

S

Y

L

T

P

V

F

E

F

G

S

V

V

Q

Q

F

F

H

H

P

P

E

E

Sites not aligning to the query:

1406 modified: Phosphoserine; by PKA; S→A: No effect on enzyme kinetics.; S→D: Increases CPSase activity and reduces sensitivity to feedback inhibition by UTP.

P27708 Multifunctional protein CAD; Carbamoyl phosphate synthetase 2-aspartate transcarbamylase-dihydroorotase; EC 6.3.5.5; EC 3.5.1.2; EC 6.3.4.16; EC 2.1.3.2; EC 3.5.2.3 from Homo sapiens (Human) (see 7 papers)
26% identity, 83% coverage: 11:174/198 of query aligns to 185:338/2225 of P27708

query
sites
P27708

F

L

T

K

Y

Y

N

N

L

Q

V

I

Q

R

Y

C

L

L

G

C

E

Q

L

R

G

G

A

A

E

E

V

V

E

T

V

V

F

V

R

P

N

W

D

D

A

-

I

-

T

-

V

-

D

H

E

A

L

L

A

D

A

S

R

Q

A

E

P

Y

S

E

H

G

I

L

L

F

L

L

S

S

P

N

G

G

P

P

C

G

T

D

P

P

D

A

E

S

A

Y

G

P

I

S

S

V

L

V

E

S

V

T

V

L

R

S

R

R

F

V

A

L

G

S

H

E

T

P

-

N

-

P

-

R

P

P

I

V

L

F

G

G

V

I

C

C

L

L

G

G

H

H

Q

Q

A

L

I

L

G

A

Q

L

A

A

F

I

G

G

G

A

R

K

V

T

V

Y

H

K

A

M

R

R

E

Y

V

G

M

N

H

R

G

G

K

-

T

-

S

-

P

-

I

-

H

-

H

H

D

N

E

Q

Q

P

G

C

V

L

F

L

A

V

G

G

L

S

E

G

N

R

P

C

F

F

E

L

A

T

T

S

R

Q

Y

N

H

H

S

G

L

F

V

A

V

V

A

E

R

T

E

D

G

S

L

L

P

P

T

A

E

D

E

-

L

-

V

-

E

-

T

-

A

-

W

W

T

A

-

P

-

L

-

F

S

T

E

N

A

A

D

N

G

D

G

G

E

S

I

N

M

E

G

G

L

I

R

V

H

H

R

N

R

S

Y

L

T

P

V

F

E

F

G

S

V

V

Q

Q

F

F

H

H

P

P

E

E

Sites not aligning to the query:

1 modified: Initiator methionine, Removed
2 modified: N-acetylalanine
33 M → R: in DEE50; uncertain significance; dbSNP:rs751610198
177 R → Q: in a colorectal cancer sample; somatic mutation; dbSNP:rs374122292
456 modified: Phosphothreonine; by MAPK1
735 Y → C: in a colorectal cancer sample; somatic mutation
1406 modified: Phosphoserine; by PKA
1471 binding Zn(2+); binding Zn(2+); H→A: No zinc-binding and no catalytic activity.; H→N: Abolishes dihydroorotase activity.
1473 binding Zn(2+); H→A: No zinc-binding and no catalytic activity.
1475 binding (S)-dihydroorotate
1505 binding (S)-dihydroorotate
1512 D→N: No change in catalytic activity.
1556 binding via carbamate group; binding via carbamate group; modified: N6-carboxylysine
1562 T→A: Abolishes dihydroorotase activity.
1563 F→A: Abolishes dihydroorotase activity.
1590 binding Zn(2+); H→A: Abolishes dihydroorotase activity.; H→N: No catalytic activity.
1613 binding Zn(2+); C→S: Reduces dihydroorotase activity.
1614 binding Zn(2+); H→A: Abolishes dihydroorotase activity.
1637 binding Zn(2+); E→T: Abolishes dihydroorotase activity.
1642 H→N: 11.5% of wild-type catalytic activity.
1661 binding (S)-dihydroorotate
1686 binding Zn(2+); D→N: Abolishes dihydroorotase activity.
1690 binding (S)-dihydroorotate; H→N: 3% of wild-type catalytic activity.
1702 binding (S)-dihydroorotate
1789:2225 natural variant: Missing (in DEE50; uncertain significance)
1859 modified: Phosphoserine; by RPS6KB1 and PKA
1873 modified: Phosphoserine; by PKC; in vitro; S→A: Abolishes PMA-induced Thr-456 phosphorylation.
1900 modified: Phosphoserine

P49915 GMP synthase [glutamine-hydrolyzing]; GMP synthetase; Glutamine amidotransferase; EC 6.3.5.2 from Homo sapiens (Human) (see paper)
27% identity, 85% coverage: 21:189/198 of query aligns to 47:207/693 of P49915

query
sites
P49915

E

E

L

L

G

F

A

V

E

Q

V

S

E

E

V

I

F

F

-

P

-

L

R

E

N

T

D

P

A

A

I

F

T

A

V

I

D

K

E

E

L

Q

A

G

A

F

R

R

A

A

P

-

S

-

H

-

I

I

L

I

S

S

P

G

G

G

P

P

C

N

T

S

P

V

D

Y

E

A

A

E

G

D

I

A

S

P

L

W

E

F

V

D

V

P

R

A

R

I

F

F

A

T

G

I

H

G

T

K

P

P

I

V

L

L

G

G

V

I

C
|
C

L

Y

G

G

H

M

Q

Q

A

M

I

M

G

N

Q

K

A

V

F

F

G

G

R

-

V

T

V

V

H

H

A

K

R

K

E

S

V

V

M

R

H

E

G

D

K

G

T

V

S

F

P

N

I

I

H

S

H

V

D

D

E

N

Q

T

-

C

G

S

V

L

F

F

A

R

G

G

L

L

E

Q

N

K

P

-

F

-

E

-

A

-

T

-

R

-

Y

-

H

E

S

E

L

V

V

V

V

L

A

L

R

T

E

H

G

G

L

D

P

S

T

V

E

D

E

K

L

V

V

A

E

D

T

G

A

F

W

K

T

V

S

V

E

A

A

R

D

S

G

G

G

N

E

I

I

V

M

A

G

G

L

I

R

A

H

N

R

E

R

S

Y

K

T

K

V

L

E

Y

G

G

V

A

Q

Q

F

F

H
|
H

P

P

E
|
E

S

V

I

G

L

L

T

T

R

E

H

N

G

G

H

K

D

V

L

I

L

L

Q

K

N

N

F

F

L

L

C104 (= C79) active site, For GATase activity
H190 (= H172) active site, For GATase activity
E192 (= E174) active site, For GATase activity

Sites not aligning to the query:

337 binding XMP
522 binding XMP
610 binding XMP
685 binding XMP
691 binding XMP

2vxoB Human gmp synthetase in complex with xmp (see paper)
26% identity, 85% coverage: 21:189/198 of query aligns to 25:182/658 of 2vxoB

query
sites
2vxoB

E

E

L

L

G

F

A

V

E

Q

V

S

E

E

V

I

F

F

-

P

-

L

R

E

N

T

D

P

A

A

I

F

T

A

V

I

D

K

E

E

L

Q

A

G

A

F

R

R

A

A

P

-

S

-

H

-

I

I

L

I

S

S

P

G

G
|
G

P

P

C

N

T

S

P

V

D

Y

E

A

A

E

G

D

I

A

S

P

L

W

E

F

V

D

V

P

R

A

R

I

F

F

A

T

G

I

H

G

T

K

P

P

I

V

L

L

G

G

V

I

C
|
C

L
x
Y

G

G

H

M

Q

Q

A

M

I

M

G

N

Q

K

A

V

F

F

G

G

R

T

V

V

V

-

H

-

A

-

R

-

E

-

V

-

M

-

H

-

G

-

K

-

T

-

S

-

P

-

I

-

H

H

H

K

D

K

E

S

Q

D

G

G

V

V

F

F

-

N

A

I

G

S

L

V

E

D

N

N

P

T

-

C

-

S

-

L

F

F

E

R

A

G

T

L

R

Q

Y

K

H

E

S

E

L

V

V

V

V

L

A

L

R

T

E

H

G

G

L

D

P

S

T

V

E

D

E

K

L

V

V

A

E

D

T

G

A

F

W

K

T

V

S

V

E

A

A

R

D

S

G

G

G

N

E

I

I

V

M

A

G

G

L

I

R

A

H

N

R

E

R

S

Y

K

T

K

V

L

E

Y

G

G

V

A

Q

Q

F

F

H
|
H

P

P

E
|
E

S

V

I

G

L

L

T

T

R

E

H

N

G

G

H

K

D

V

L

I

L

L

Q

K

N

N

F

F

L

L

active site: G55 (= G52), C82 (= C79), Y83 (≠ L80), H165 (= H172), E167 (= E174)

Sites not aligning to the query:

active site: 223, 381
binding xanthosine-5'-monophosphate: 302, 348, 349, 404, 405, 406, 489, 575, 610, 650, 654, 655, 656

Q18990 Multifunctional protein pyr-1; EC 6.3.5.5; EC 3.5.1.2; EC 6.3.4.16; EC 2.1.3.2; EC 3.5.2.3 from Caenorhabditis elegans (see 3 papers)
29% identity, 65% coverage: 47:174/198 of query aligns to 221:341/2198 of Q18990

query
sites
Q18990

I

L

L

F

L

L

S

S

P

N

G

G

P

P

C

G

T

D

P

P

D

E

E

-

A

-

G

-

I

I

S

C

L

A

E

P

V

L

V

V

R

D

R

R

F

L

A

A

-

K

-

V

-

I

-

A

-

R

G

G

H

D

T

K

P

P

I

I

L

F

G

G

V

I

C

C

L

L

G

G

H

H

Q

Q

A

I

I

L

G

S

Q

R

A

A

F

I

G

G

G

A

R

K

V

T

V

Y

H

K

A

L

R

K

E

Y

V

G

M

N

H

R

G

G

K

H

T

N

S

Q

P

P

I

C

H

T

H

H

D

Y

E

A

Q

T

G

G

V

-

F

-

A

-

G

-

L

-

E

-

N

R

P

C

F

Y

E

I

A

T

T

S

R

Q

Y

N

H

H

S

G

L

Y

V

A

V

V

A

D

R

P

E

D

G

S

L

L

P

P

T

A

E

D

E

-

L

-

V

W

E

K

T

A

A

L

W

F

T

T

S

N

E

E

A

N

D

D

G

K

G

T

E

N

I

-

M

E

G

G

L

I

R

V

H

H

R

S

Y

K

T

P

V

F

E

F

G

S

V

V

Q

Q

F

F

H

H

P

P

E

E

Sites not aligning to the query:

1602 H→Q: In cu8; probable loss of dihydroorotase activity. Severe late stage embryonic lethality in 50% of animals. The few surviving mutants have a shorter and thicker pharyngeal isthmus, an abnormal knobbed tail, mild egg-laying defects, moderate fluid accumulation in the coelom and a slower growth. Actin and intermediate filaments are disorganized in the pharynx. Moderate reduction in heparan sulfate levels and increased levels of chondroitin sulfate. In an umps-1 zu456 mutant background, prevents the formation of abnormally enlarged gut granules in embryos. Complete embryonic lethality in a rnst-2 qx245 mutant background.

P05990 Multifunctional protein r; Protein rudimentary; EC 6.3.5.5; EC 3.5.1.2; EC 6.3.4.16; EC 2.1.3.2; EC 3.5.2.3 from Drosophila melanogaster (Fruit fly) (see 2 papers)
28% identity, 65% coverage: 47:174/198 of query aligns to 235:355/2224 of P05990

query
sites
P05990

I

L

L

F

L

L

S

S

P

N

G

G

P

P

C

G

T

N

P

P

D

E

E

S

A

C

G

D

I

Q

S

I

L

V

E

Q

V

Q

V

V

R

R

R

K

F

V

A

I

-

E

G

G

H

Q

T

K

P

P

I

V

L

F

G

G

V

I

C

C

L

L

G

G

H

H

Q

Q

A

L

I

L

G

A

Q

K

A

A

F

I

G

G

G

C

R

S

V

T

V

Y

H

K

A

M

R

K

E

Y

V

G

M

N

H

R

G

G

K

H

T

N

S

L

P

P

I

C

H

L

H

H

D

R

E

A

Q

T

G

G

V

-

F

-

A

-

G

-

L

-

E

-

N

R

P

C

F

L

E

M

A

T

T

S

R

Q

Y

N

H

H

S

G

L

Y

V

A

V

V

A

D

R

L

E

E

G

Q

L

L

P

P

T

-

E

-

L

-

V

-

E

-

T

D

A

G

W

W

T

S

S

E

-

L

-

F

-

V

E

N

A

A

D

N

G

D

G

G

E

T

I

N

M

E

G

G

L

I

R

V

H

H

R

A

R

S

Y

K

T

P

V

Y

E

F

G

S

V

V

Q

Q

F

F

H

H

P

P

E

E

Sites not aligning to the query:

1167 E→K: Severely diminishes UTP inhibition of CPSase; in Su(b).
1883 modified: Phosphoserine
1885 modified: Phosphoserine
1892 modified: Phosphoserine
1894 modified: Phosphoserine

P0A6F1 Carbamoyl phosphate synthase small chain; Carbamoyl phosphate synthetase glutamine chain; EC 6.3.5.5 from Escherichia coli (strain K12) (see paper)
25% identity, 82% coverage: 14:175/198 of query aligns to 204:356/382 of P0A6F1

query
sites
P0A6F1

N

N

L

I

V

L

Q

R

Y

M

L

L

G

V

E

D

L

R

G

G

A

C

E

R

V

L

E

T

V

I

F

V

R

P

N

A

D

Q

A

T

I

S

T

A

V

E

D

D

E

V

L

L

A

K

A

M

R

N

A

-

P

P

S

D

H

G

I

I

L

F

L

L

S

S

P

N

G
|
G

P

P

C
x
G

T

D

P

P

D

A

E

P

A

C

G

D

I

Y

S

A

L

I

E

T

V

A

V

I

R

Q

R

K

F

F

-

L

A

E

G

T

H

D

T

I

P

P

I

V

L

F

G

G

V

I

C

C

L
|
L

G

G

H

H

Q
|
Q

A

L

I

L

G

A

Q

L

A

A

F

S

G

G

G

A

R

K

V

T

V

V

H

K

A

M

R

K

E

F

V

G

M

H

H

H

G

G

K

G

T

N

S

H

P

P

I

V

H

K

H

D

D

V

E

E

Q

K

G

N

V

V

F

V

A

-

G

-

L

-

E

-

N

-

P

-

F

M

E

I

A

T

T

A

R

Q

Y
x
N

H

H

S
x
G

L
x
F

V

A

V

V

A

D

R

E

E

A

G

T

L

L

P

P

T

A

E

N

E

-

L

-

V

L

E

R

T

V

A

T

W

H

T

K

S

S

E

L

A

F

D

D

G

-

G

G

E

T

I

L

M

Q

G

G

L

I

R

H

H

R

R

T

R

D

Y

K

T

P

V

A

E

F

G

S

V

F

Q

Q

F

G

H

H

P

P

E

E

S

A

G241 (= G52) binding L-glutamine
G243 (≠ C54) binding L-glutamine
L270 (= L80) binding L-glutamine
Q273 (= Q83) binding L-glutamine
N311 (≠ Y127) binding L-glutamine
G313 (≠ S129) binding L-glutamine
F314 (≠ L130) binding L-glutamine

Sites not aligning to the query:

47 binding L-glutamine

1ce8B Carbamoyl phosphate synthetase from escherichis coli with complexed with the allosteric ligand imp (see paper)
25% identity, 82% coverage: 14:175/198 of query aligns to 203:355/379 of 1ce8B

query
sites
1ce8B

N

N

L

I

V

L

Q

R

Y

M

L

L

G

V

E

D

L

R

G

G

A

C

E

R

V

L

E

T

V

I

F

V

R

P

N

A

D

Q

A

T

I

S

T

A

V

E

D

D

E

V

L

L

A

K

A

M

R

N

A

-

P

P

S

D

H

G

I

I

L

F

L

L

S

S

P

N

G

G

P

P

C

G

T

D

P

P

D

A

E

P

A

C

G

D

I

Y

S

A

L

I

E

T

V

A

V

I

R

Q

R

K

F

F

-

L

A

E

G

T

H

D

T

I

P

P

I

V

L

F

G

G

V

I

C
|
C

L

L

G

G

H

H

Q

Q

A

L

I

L

G

A

Q

L

A

A

F

S

G

G

G

A

R

K

V

T

V

V

H

K

A

M

R

K

E

F

V

G

M

H

H

H

G

G

K

G

T

N

S

H

P

P

I

V

H

K

H

D

D

V

E

E

Q

K

G

N

V

V

F

V

A

-

G

-

L

-

E

-

N

-

P

-

F

M

E

I

A

T

T

A

R

Q

Y

N

H

H

S

G

L

F

V

A

V

V

A

D

R

E

E

A

G

T

L

L

P

P

T

A

E

N

E

-

L

-

V

L

E

R

T

V

A

T

W

H

T

K

S

S

E

L

A

F

D

D

G

-

G

G

E

T

I

L

M

Q

G

G

L

I

R

H

H

R

R

T

R

D

Y

K

T

P

V

A

E

F

G

S

V

F

Q

Q

F

G

H
|
H

P

P

E
|
E

S

A

active site: C268 (= C79), H352 (= H172), E354 (= E174)

Sites not aligning to the query:

binding L-ornithine: 119, 122

3r75B Crystal structure of 2-amino-2-desoxyisochorismate synthase (adic) synthase phze from burkholderia lata 383 in complex with benzoate, pyruvate, glutamine and contaminating zn2+ (see paper)
26% identity, 92% coverage: 4:185/198 of query aligns to 435:610/622 of 3r75B

query
sites
3r75B

M

I

I

V

D

D

N

A

Y

E

D

D

S

H

F

F

T

T

Y

A

N

M

L

I

V

A

Q

Q

Y

Q

L

L

G

S

E

S

L

L

G

G

A

L

E

A

V

T

E

E

V

V

F

C

-

G

R

V

N

H

D

D

A

A

I

V

T

D

V

L

D

A

E

R

L

Y

A

D

A

V

R

-

A

-

P

-

S

-

H

-

I

V

L

V

L

M

S

G

P

P

G

G

P

P

C

G

T

D

P

P

D

S

E

D

A

A

G

G

I

-

S

D

L

P

E

R

V

I

V

A

R

R

R

L

F

Y

A

A

-

W

-

L

-

R

-

H

-

L

-

I

-

D

G

E

H

G

T

K

P

P

I

F

L

M

G

A

V

V

C
|
C

L

L

G

S

H

H

Q

Q

A

I

I

L

G

N

Q

A

A

I

F

L

G

G

G

I

R

P

V

L

V

V

H

R

A

R

R

E

E

V

V

P

M

N

H

Q

G

G

K

I

T

Q

S

V

P

E

I

I

H

D

H

L

D

F

E

G

Q

Q

G

R

V

E

F

R

A

V

G

G

L

F

E
x
Y

N

N

P

T

F

Y

E

V

A

A

T

Q

R

-

Y

-

H

-

S

-

L

-

V

-

V

T

A

V

R

R

E

D

G

E

L

M

P

D

T

V

E

D

E

G

L

V

V

G

E

T

T

V

A

A

W

I

T

S

S

R

E

D

A

P

D

R

G

T

G

G

E

E

I

V

M

H

G

A

L

L

R

R

H

G

R

P

R

-

Y

-

T

T

V

F

E

S

G

S

V

M

Q

Q

F

F

H
|
H

P

A

E

E

S

S

I

V

L

L

T

T

R

V

H

D

G

G

H

P

D

R

L

I

L

L

binding zinc ion: C512 (= C79), Y552 (≠ E119), H597 (= H172)

Sites not aligning to the query:

active site: 143, 195, 238, 273, 298, 322, 346, 363, 376, 380
binding magnesium ion: 238, 376
binding pyruvic acid: 322, 346, 360, 361, 380

P07258 Carbamoyl phosphate synthase arginine-specific small chain; CPS; CPSase; CPSase-arg; Arginine-specific carbamoyl phosphate synthetase, glutamine chain; Carbamoyl phosphate synthase A; CPS-A; Glutamine-dependent carbamoyl phosphate synthetase; EC 6.3.5.5 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
27% identity, 82% coverage: 14:175/198 of query aligns to 196:352/411 of P07258

query
sites
P07258

N

N

L

I

V

I

Q

R

Y

C

L

L

G

V

E

K

L

R

G

G

A

A

E

N

V

V

E

T

V

V

F

F

R

P

N

Y

D

D

A

Y

I

R

T

I

V

Q

D

D

E

-

L

-

A

V

A

A

R

S

A

E

P

F

S

D

H

G

I

I

L

F

L

L

S

S

P

N

G

G

P

P

C

G

T

N

P

P

D

E

E

L

A

C

G

Q

I

A

S

T

L

I

E

S

V

N

V

V

R

R

R

E

F

L

A

L

G

N

H

N

-

P

-

V

-

Y

-

D

-

C

T

I

P

P

I

I

L

F

G

G

V

I

C
|
C

L

L

G

G

H

H

Q

Q

A

L

I

L

G

A

Q

L

A

A

F

S

G

G

-

A

-

S

-

T

-

H

-

K

-

L

-

K

-

Y

G

G

R

N

V

R

V

A

H

H

A

N

R

I

E

P

V

A

M

M

H

D

G

L

K

T

T

T

S

G

P

Q

I

C

H

H

H

I

D

T

E

S

Q

Q

G

N

V

-

F

-

A

-

G

-

L

-

E

-

N

-

P

-

F

-

E

-

A

-

T

-

R

-

Y

-

H
|
H

S

G

L

Y

V

A

V

V

A

D

R

P

E

E

G

T

L

L

P

P

T

K

E

D

E

Q

L

W

V

K

E

P

T

Y

A

F

W

V

T

N

S

L

E

N

A

D

D

K

G

S

G

N

E

E

I

-

M

-

G

G

L

M

R

I

H

H

R

L

R

Q

Y

R

T

P

V

I

E

F

G

S

V

T

Q

Q

F

F

H
|
H

P

P

E

E

S

A

C264 (= C79) mutation to D: Abolishes glutamine-dependent CPSase activity.
H307 (= H128) mutation to D: Abolishes glutamine-dependent CPSase activity.
H349 (= H172) mutation to D: Abolishes glutamine-dependent CPSase activity.

Query Sequence

>WP_093428194.1 NCBI__GCF_900112605.1:WP_093428194.1
MLAMIDNYDSFTYNLVQYLGELGAEVEVFRNDAITVDELAARAPSHILLSPGPCTPDEAG
ISLEVVRRFAGHTPILGVCLGHQAIGQAFGGRVVHAREVMHGKTSPIHHDEQGVFAGLEN
PFEATRYHSLVVAREGLPTEELVETAWTSEADGGEIMGLRHRRYTVEGVQFHPESILTRH
GHDLLQNFLAFRGGEWNR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory