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Comparing WP_094506961.1 NCBI__GCF_002252445.1:WP_094506961.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
8qbyF Respiratory complex i from paracoccus denitrificans in msp2n2 nanodiscs
77% identity, 96% coverage: 1:416/435 of query aligns to 1:417/421 of 8qbyF
- binding flavin mononucleotide: G54 (= G54), R55 (= R55), G56 (= G56), K65 (= K65), N83 (= N83), E86 (= E86), Y171 (= Y170), G174 (= G173), E175 (= E174), V209 (= V208), N210 (= N209), N211 (= N210), S214 (= S213)
- binding iron/sulfur cluster: I172 (= I171), P190 (= P189), C346 (= C345), G347 (= G346), Q348 (= Q347), C349 (= C348), C352 (= C351), T390 (= T389), C392 (= C391), L394 (= L393), G395 (= G394)
8b9zF Drosophila melanogaster complex i in the active state (dm1) (see paper)
69% identity, 97% coverage: 2:421/435 of query aligns to 17:437/441 of 8b9zF
- binding flavin mononucleotide: G69 (= G54), G71 (= G56), K80 (= K65), N98 (= N83), D100 (= D85), G189 (= G173), E191 (= E175), N226 (= N210), A408 (= A392), L409 (= L393)
- binding iron/sulfur cluster: P205 (= P189), C361 (= C345), G362 (= G346), Q363 (= Q347), C364 (= C348), C367 (= C351), T405 (= T389), C407 (= C391), L409 (= L393)
8eswV1 NADH dehydrogenase (Ubiquinone) 24 kDa subunit, isoform A (see paper)
69% identity, 97% coverage: 2:421/435 of query aligns to 15:435/439 of 8eswV1
- binding flavin mononucleotide: G67 (= G54), G69 (= G56), K78 (= K65), N96 (= N83), D98 (= D85), E99 (= E86), G187 (= G173), E188 (= E174), N224 (= N210), A406 (= A392)
- binding iron/sulfur cluster: I185 (= I171), P203 (= P189), C359 (= C345), Q361 (= Q347), C362 (= C348), C365 (= C351), T403 (= T389), I404 (= I390), C405 (= C391), L407 (= L393)
- binding : Y143 (≠ M130), N144 (≠ R131), Q150 (= Q137), D174 (= D160)
7aqrF Cryo-em structure of arabidopsis thaliana complex-i (peripheral arm) (see paper)
71% identity, 94% coverage: 2:408/435 of query aligns to 8:415/434 of 7aqrF
- binding flavin mononucleotide: G60 (= G54), R61 (= R55), G62 (= G56), K71 (= K65), N89 (= N83), D91 (= D85), Y177 (= Y170), G180 (= G173), E181 (= E174), E182 (= E175), T216 (≠ N209), N217 (= N210)
- binding iron/sulfur cluster: S351 (= S344), C352 (= C345), G353 (= G346), Q354 (= Q347), C355 (= C348), C358 (= C351), T396 (= T389), C398 (= C391), L400 (= L393)
7arcF Cryo-em structure of polytomella complex-i (peripheral arm) (see paper)
68% identity, 96% coverage: 2:418/435 of query aligns to 9:426/430 of 7arcF
- binding flavin mononucleotide: G61 (= G54), R62 (= R55), K72 (= K65), N90 (= N83), D92 (= D85), E93 (= E86), S94 (= S87), Y178 (= Y170), G181 (= G173), E182 (= E174), T217 (≠ N209), N218 (= N210), L401 (= L393)
- binding iron/sulfur cluster: S352 (= S344), C353 (= C345), G354 (= G346), Q355 (= Q347), C356 (= C348), C359 (= C351), T397 (= T389), C399 (= C391), L401 (= L393)
7dgq8 NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial (see paper)
65% identity, 97% coverage: 2:422/435 of query aligns to 4:425/427 of 7dgq8
- binding flavin mononucleotide: G58 (= G56), K67 (= K65), N85 (= N83), D87 (= D85), E88 (= E86), G89 (≠ S87), C175 (= C172), G176 (= G173), A212 (≠ N209), N213 (= N210)
- binding iron/sulfur cluster: S347 (= S344), C348 (= C345), G349 (= G346), C351 (= C348), C354 (= C351), C394 (= C391), L396 (= L393)
- binding : R121 (≠ H119), Y132 (≠ M130), Q139 (= Q137), R143 (≠ D141), Y146 (= Y144), E147 (≠ D145), F165 (= F162), R168 (≠ H165)
7v2cA Active state complex i from q10 dataset (see paper)
66% identity, 96% coverage: 2:420/435 of query aligns to 10:429/433 of 7v2cA
- binding flavin mononucleotide: G62 (= G54), K73 (= K65), N91 (= N83), Y179 (= Y170), G182 (= G173), E183 (= E174), N219 (= N210), A401 (= A392), L402 (= L393)
- binding iron/sulfur cluster: P198 (= P189), C354 (= C345), G355 (= G346), Q356 (= Q347), C357 (= C348), C360 (= C351), T398 (= T389), C400 (= C391), L402 (= L393)
6zk91 Peripheral domain of open complex i during turnover (see paper)
65% identity, 97% coverage: 2:422/435 of query aligns to 7:428/430 of 6zk91
- binding flavin mononucleotide: G59 (= G54), G61 (= G56), K70 (= K65), N88 (= N83), D90 (= D85), E91 (= E86), G179 (= G173), E180 (= E174), A215 (≠ N209), N216 (= N210), A398 (= A392), L399 (= L393)
- binding 1,4-dihydronicotinamide adenine dinucleotide: G61 (= G56), G62 (= G57), A63 (= A58), F65 (= F60), K70 (= K65), E93 (= E88), Y176 (= Y170), E181 (= E175), F201 (= F195), T323 (= T317)
- binding iron/sulfur cluster: I177 (= I171), P195 (= P189), C351 (= C345), G352 (= G346), Q353 (= Q347), C354 (= C348), C357 (= C351), T395 (= T389), C397 (= C391), L399 (= L393)
5lnk1 Entire ovine respiratory complex i (see paper)
65% identity, 97% coverage: 2:422/435 of query aligns to 9:430/432 of 5lnk1
- binding fe2/s2 (inorganic) cluster: P96 (= P89), G97 (= G90)
- binding flavin mononucleotide: G61 (= G54), R62 (= R55), K72 (= K65), N90 (= N83), D92 (= D85), E93 (= E86), G94 (≠ S87), Y178 (= Y170), G181 (= G173), E182 (= E174), V216 (= V208), A217 (≠ N209), N218 (= N210), T221 (≠ S213), L401 (= L393)
- binding iron/sulfur cluster: P197 (= P189), S352 (= S344), C353 (= C345), Q355 (= Q347), C356 (= C348), C359 (= C351), T397 (= T389), I398 (= I390), C399 (= C391)
P25708 NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; NDUFV1; Complex I-51kD; CI-51kD; NADH dehydrogenase flavoprotein 1; NADH-ubiquinone oxidoreductase 51 kDa subunit; EC 7.1.1.2 from Bos taurus (Bovine) (see paper)
66% identity, 95% coverage: 2:416/435 of query aligns to 35:450/464 of P25708
- C379 (= C345) binding [4Fe-4S] cluster
- C382 (= C348) binding [4Fe-4S] cluster
- C385 (= C351) binding [4Fe-4S] cluster
- C425 (= C391) binding [4Fe-4S] cluster
Q91YT0 NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; NDUFV1; Complex I-51kD; CI-51kD; NADH-ubiquinone oxidoreductase 51 kDa subunit; EC 7.1.1.2 from Mus musculus (Mouse) (see 2 papers)
65% identity, 97% coverage: 2:422/435 of query aligns to 35:456/464 of Q91YT0
- C379 (= C345) binding [4Fe-4S] cluster
- C382 (= C348) binding [4Fe-4S] cluster
- C385 (= C351) binding [4Fe-4S] cluster
- C425 (= C391) binding [4Fe-4S] cluster
Sites not aligning to the query:
- 1:20 modified: transit peptide, Mitochondrion
P49821 NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; NDUFV1; Complex I-51kD; CI-51kD; NADH dehydrogenase flavoprotein 1; NADH-ubiquinone oxidoreductase 51 kDa subunit; EC 7.1.1.2 from Homo sapiens (Human) (see paper)
65% identity, 96% coverage: 2:419/435 of query aligns to 35:453/464 of P49821
- C379 (= C345) binding [4Fe-4S] cluster
- C382 (= C348) binding [4Fe-4S] cluster
- C385 (= C351) binding [4Fe-4S] cluster
- C425 (= C391) binding [4Fe-4S] cluster
8gymv1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial (see paper)
65% identity, 99% coverage: 2:430/435 of query aligns to 6:436/442 of 8gymv1
- binding flavin mononucleotide: G58 (= G54), G60 (= G56), N88 (= N83), D90 (= D85), Y176 (= Y170), E180 (= E174), E181 (= E175), T215 (≠ N209), N216 (= N210), T219 (≠ S213), A398 (= A392), L399 (= L393)
- binding iron/sulfur cluster: I177 (= I171), P195 (= P189), C351 (= C345), G352 (= G346), Q353 (= Q347), C354 (= C348), C357 (= C351), T395 (= T389), C397 (= C391), L399 (= L393), G400 (= G394)
7zm7B Cryoem structure of mitochondrial complex i from chaetomium thermophilum (inhibited by ddm) (see paper)
64% identity, 96% coverage: 2:420/435 of query aligns to 7:429/456 of 7zm7B
- binding flavin mononucleotide: G59 (= G54), G61 (= G56), K70 (= K65), N91 (= N83), D93 (= D85), G182 (= G173), E183 (= E174), E184 (= E175), A218 (≠ N209), N219 (= N210), A401 (= A392), L402 (= L393)
- binding iron/sulfur cluster: P198 (= P189), C354 (= C345), G355 (= G346), Q356 (= Q347), C357 (= C348), C360 (= C351), T398 (= T389), C400 (= C391), L402 (= L393)
7o6yB Cryo-em structure of respiratory complex i under turnover (see paper)
64% identity, 96% coverage: 2:419/435 of query aligns to 5:426/457 of 7o6yB
- binding flavin mononucleotide: G57 (= G54), G59 (= G56), K68 (= K65), N89 (= N83), D91 (= D85), E92 (= E86), G180 (= G173), E181 (= E174), E182 (= E175), T216 (≠ N209), N217 (= N210)
- binding 1,4-dihydronicotinamide adenine dinucleotide: G59 (= G56), G60 (= G57), F63 (= F60), K68 (= K65), E94 (= E88), Y177 (= Y170), E182 (= E175), F202 (= F195), T324 (= T317)
- binding iron/sulfur cluster: P196 (= P189), S351 (= S344), C352 (= C345), G353 (= G346), Q354 (= Q347), C355 (= C348), C358 (= C351), T396 (= T389), C398 (= C391), L400 (= L393)
7b0nF 3.7-angstrom structure of Yarrowia lipolytica complex I with an R121M mutation in NUCM. (see paper)
64% identity, 96% coverage: 2:419/435 of query aligns to 6:427/460 of 7b0nF
- binding flavin mononucleotide: G60 (= G56), K69 (= K65), N90 (= N83), D92 (= D85), E93 (= E86), G94 (≠ S87), Y178 (= Y170), G181 (= G173), E182 (= E174), N218 (= N210)
- binding iron/sulfur cluster: P197 (= P189), S352 (= S344), C353 (= C345), Q355 (= Q347), C356 (= C348), C359 (= C351), T397 (= T389), C399 (= C391)
8j9iV1 ndufv1 (see paper)
63% identity, 97% coverage: 1:420/435 of query aligns to 16:438/504 of 8j9iV1
- binding flavin mononucleotide: G69 (= G54), G71 (= G56), K80 (= K65), N100 (= N83), D102 (= D85), E103 (= E86), G191 (= G173), E192 (= E174), V226 (= V208), N228 (= N210), T231 (≠ S213), A410 (= A392), L411 (= L393)
- binding 1,4-dihydronicotinamide adenine dinucleotide: G71 (= G56), G72 (= G57), F75 (= F60), K80 (= K65), F83 (= F68), E105 (= E88), Y188 (= Y170), E193 (= E175), F213 (= F195), T335 (= T317), A410 (= A392)
- binding iron/sulfur cluster: P207 (= P189), S362 (= S344), C363 (= C345), N364 (≠ G346), Q365 (= Q347), C366 (= C348), C369 (= C351), C409 (= C391), L411 (= L393)
8iufV1 ndufv2 (see paper)
63% identity, 97% coverage: 1:420/435 of query aligns to 16:438/504 of 8iufV1
- binding flavin mononucleotide: G69 (= G54), G71 (= G56), K80 (= K65), N100 (= N83), D102 (= D85), Y188 (= Y170), G191 (= G173), E192 (= E174), N228 (= N210), L411 (= L393)
- binding iron/sulfur cluster: S362 (= S344), C363 (= C345), N364 (≠ G346), Q365 (= Q347), C366 (= C348), C369 (= C351), C409 (= C391), L411 (= L393)
8x9vC Crystal structure of xanthomonas oryzae pv. Oryzae nadh-quinone oxidoreductase subunits nuoe and nuof
51% identity, 86% coverage: 43:416/435 of query aligns to 50:410/416 of 8x9vC
- binding flavin mononucleotide: G61 (= G54), G63 (= G56), K72 (= K65), N88 (= N83), D90 (= D85), S92 (= S87), G180 (= G173), E181 (= E174), E182 (= E175), N216 (= N209), N217 (= N210), T220 (≠ S213)
8e9hF Mycobacterial respiratory complex i, fully-inserted quinone (see paper)
50% identity, 88% coverage: 36:417/435 of query aligns to 35:422/436 of 8e9hF
- binding flavin mononucleotide: G53 (= G54), R54 (= R55), G55 (= G56), A57 (= A58), K64 (= K65), N90 (= N83), D92 (= D85), Y178 (= Y170), G181 (= G173), E182 (= E174), E183 (= E175), N217 (= N209), N218 (= N210), S221 (= S213), L398 (= L393)
- binding iron/sulfur cluster: P197 (= P189), S349 (= S344), C350 (= C345), G351 (= G346), K352 (≠ Q347), C353 (= C348), C356 (= C351), S394 (≠ T389), F395 (≠ I390), C396 (= C391), L398 (= L393), G399 (= G394)
- binding zinc ion: C333 (≠ D328), E371 (≠ V366), H420 (≠ R415)
Sites not aligning to the query:
Query Sequence
>WP_094506961.1 NCBI__GCF_002252445.1:WP_094506961.1
MLADKDRIFTNIYGFKDQSLKGAMSRGHWDNTKGFVEKGRDWIINEMKASNLRGRGGAGF
PTGLKWSFMPKEVTDRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMSAHT
AYIYLRGEFMREREALQAAIDECYDAGLLGKNNKCGWDMDIFLHHGAGAYICGEETALLE
SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGGAWFSSIGRPNNVGTK
LFQISGHVNTPCTVEESLGITFRELIEKHGGGIRGGWDNLLGVIPGGASCPIIKGEDMMD
AIMDFDGMREKKSSFGTGGVIVMDKSTDVIKAIARLAAFFKHESCGQCTPCREGTGWMWR
VMERMVKGNAQKREIDMLLDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDDYT
RNAVQSRNTRLEAAE
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory