SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_094509141.1 NCBI__GCF_002252445.1:WP_094509141.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
39% identity, 90% coverage: 44:425/426 of query aligns to 43:424/427 of 8b01B

query
sites
8b01B
Q
 
Q
K
 
Q
M
 
M
F
 
I
N
 
G
A
 
G
L
 
L
D
 
D
S
 
N
F
 
F
P
 
T
L
 
L
L
 
L
A
 
A
I
 
V
P
 
P
F
 
F
F
 
F
I
 
V
L
 
L
A
 
T
G
 
G
N
 
H
L
 
L
M
 
M
S
 
N
H
 
S
G
 
A
G
 
G
V
 
I
S
 
T
R
 
E
R
 
R
L
 
I
V
 
F
D
 
N
F
 
F
A
 
A
K
 
K
S
 
A
M
 
M
V
 
V
G
 
G
G
 
H
V
 
I
Q
 
T
G
 
G
G
 
S
L
 
L
A
 
G
A
 
H
S
 
V
C
 
N
V
 
I
L
 
L
T
 
A
C
 
S
M
 
L
I
 
L
F
 
F
S
|
S
S
 
G
I
 
M
S
|
S
G
|
G
S
 
S
S
 
A
V
 
L
A
 
A
T
 
D
T
 
A
F
 
G
A
 
G
V
 
L
G
 
G
A
 
Q
I
 
L
L
 
E
I
 
I
P
 
K
A
 
S
M
 
M
V
 
R
R
 
D
H
 
A
G
 
K
Y
 
Y
P
 
D
T
 
D
P
 
D
V
 
F
A
 
A
G
 
G
T
 
G
I
 
L
Q
 
T
A
 
A
T
 
A
S
 
S
A
 
C
E
 
I
L
 
I
G
|
G
V
 
P
I
 
L
L
x
V
P
|
P
P
|
P
S
 
S
I
 
I
P
 
P
M
 
L
I
 
V
L
 
I
Y
 
Y
A
 
G
V
 
V
S
 
V
T
 
S
E
 
N
T
 
T
S
 
S
V
 
I
T
 
G
Q
 
A
I
 
L
F
 
F
I
 
L
A
 
A
G
 
G
I
 
A
G
 
I
P
 
P
G
 
G
L
 
L
L
 
L
I
 
C
A
 
C
G
 
I
A
 
A
L
 
L
I
 
C
I
 
I
M
 
M
T
 
T
Q
 
Y
I
 
F
W
 
I
C
 
A
R
 
K
V
 
K
K
 
R
G
 
G
Y
 
Y
G
 
M
K
 
T
N
 
L
D
 
P
G
 
R
D
 
A
D
 
S
R
 
R
K
 
K
G
 
E
F
 
R
L
 
L
K
 
I
S
 
A
A
 
F
V
 
R
S
 
D
A
 
A
F
 
F
W
 
L
S
 
S
L
 
L
M
 
L
M
 
T
P
 
P
V
 
F
V
 
I
I
 
I
V
 
I
G
 
G
G
 
G
I
 
I
Y
 
F
G
 
S
G
 
G
I
 
K
F
 
F
T
 
T
P
 
P
T
 
T
E
 
E
A
 
A
A
 
A
A
 
I
I
 
I
A
 
S
V
 
S
F
 
L
L
 
Y
A
 
A
L
 
L
F
 
F
I
 
L
G
 
G
L
 
T
F
 
V
I
 
V
Y
 
Y
R
 
K
E
 
S
L
 
L
K
 
T
F
 
M
T
 
D
D
 
K
L
 
F
P
 
I
K
 
K
I
 
L
F
 
V
R
 
Q
Q
 
E
S
 
T
V
 
V
V
 
T
S
 
T
T
 
T
G
 
S
A
 
V
V
 
V
M
 
A
L
 
L
I
 
M
I
 
V
A
 
M
A
 
G
A
 
V
G
 
T
L
 
V
F
 
F
S
 
G
F
 
W
L
 
I
V
 
V
S
 
A
M
 
R
S
 
E
G
 
Q
L
 
L
P
 
P
K
 
Q
M
 
Q
V
 
L
G
 
A
S
 
E
W
 
L
A
 
F
S
 
L
D
 
S
S
 
I
F
 
S
E
 
D
S
 
N
W
 
P
I
 
L
T
 
I
F
 
L
L
 
L
L
 
L
F
 
L
V
 
I
N
 
N
I
 
L
L
 
L
L
 
L
F
 
L
V
 
F
V
 
L
G
|
G
M
x
T
F
 
F
V
 
I
E
 
E
T
 
S
S
 
L
A
 
A
A
 
L
I
 
L
L
 
L
V
 
L
L
 
L
A
 
V
P
 
P
I
 
F
L
 
L
A
 
V
P
 
P
I
 
V
A
 
A
I
 
T
L
 
S
Y
 
V
G
 
G
I
 
I
D
 
D
P
 
P
V
 
V
H
 
H
F
 
F
G
 
G
M
 
V
I
 
M
M
 
A
I
 
I
V
 
L
N
 
N
L
 
L
A
 
M
M
 
I
G
|
G
M
x
I
I
 
L
T
|
T
P
 
P
P
 
P
L
x
M
G
|
G
V
 
M
N
 
A
L
 
L
F
 
Y
A
 
V
A
 
V
A
 
S
S
 
K
V
 
V
A
 
G
K
 
N
I
 
I
P
 
P
V
 
F
Q
 
H
-
 
V
-
 
L
-
 
T
R
 
R
M
 
G
F
 
V
K
 
L
P
 
P
L
 
L
I
 
L
W
 
V
P
 
P
V
 
L
T
 
-
A
 
F
I
 
I
I
 
V
L
 
L
S
 
G
L
 
L
M
 
I
V
 
I
I
 
V
T
 
-
Y
 
-
V
 
F
P
 
P
Q
 
Q
I
 
I
S
 
T
L
 
L
F
 
F
L
 
L
R
 
P
D
 
Q
L
 
L
S
 
V
L
 
L
A
 
G

Query Sequence

>WP_094509141.1 NCBI__GCF_002252445.1:WP_094509141.1
MNIALVSALMILFALSVPVAVAIAMSAIFSISFFSNLPLLVVPQKMFNALDSFPLLAIPF
FILAGNLMSHGGVSRRLVDFAKSMVGGVQGGLAASCVLTCMIFSSISGSSVATTFAVGAI
LIPAMVRHGYPTPVAGTIQATSAELGVILPPSIPMILYAVSTETSVTQIFIAGIGPGLLI
AGALIIMTQIWCRVKGYGKNDGDDRKGFLKSAVSAFWSLMMPVVIVGGIYGGIFTPTEAA
AIAVFLALFIGLFIYRELKFTDLPKIFRQSVVSTGAVMLIIAAAGLFSFLVSMSGLPKMV
GSWASDSFESWITFLLFVNILLFVVGMFVETSAAILVLAPILAPIAILYGIDPVHFGMIM
IVNLAMGMITPPLGVNLFAAASVAKIPVQRMFKPLIWPVTAIILSLMVITYVPQISLFLR
DLSLAQ

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory