SitesBLAST
Comparing WP_097070321.1 NCBI__GCF_900217815.1:WP_097070321.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3pm9A Crystal structure of a putative dehydrogenase (rpa1076) from rhodopseudomonas palustris cga009 at 2.57 a resolution
42% identity, 100% coverage: 2:462/463 of query aligns to 5:465/465 of 3pm9A
- active site: A149 (= A144), L159 (≠ S154)
- binding flavin-adenine dinucleotide: P69 (= P65), Q70 (≠ V66), G71 (≠ A67), G72 (= G68), N73 (= N69), T74 (= T70), G75 (= G71), L76 (= L72), G79 (= G75), Q80 (vs. gap), L91 (= L86), L133 (≠ F128), G134 (= G129), A135 (≠ S130), C139 (≠ A134), T140 (≠ M135), G142 (= G137), G143 (= G138), S146 (= S141), T147 (= T142), A149 (= A144), G150 (= G145), E200 (= E195), G201 (= G196), I205 (= I200), I206 (= I201), E423 (= E420)
6lpnB Crystal structure of human d-2-hydroxyglutarate dehydrogenase in apo form (see paper)
38% identity, 94% coverage: 28:463/463 of query aligns to 39:466/467 of 6lpnB
- binding flavin-adenine dinucleotide: W40 (= W29), P76 (= P65), G78 (≠ A67), G79 (= G68), N80 (= N69), T81 (= T70), G82 (= G71), M83 (≠ L72), G86 (= G75), S87 (≠ T76), L140 (≠ F128), A142 (≠ S130), C146 (≠ A134), H147 (≠ M135), G150 (= G138), N151 (≠ F139), A153 (≠ S141), T154 (= T142), G208 (= G196), I212 (= I200), I213 (= I201), E423 (= E420), N460 (= N457)
6lpxA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with 2-oxoglutarate (2-og) (see paper)
38% identity, 94% coverage: 28:463/463 of query aligns to 38:465/466 of 6lpxA
- binding 2-oxoglutaric acid: R333 (= R329), T337 (≠ A333), K348 (≠ D344), Y379 (≠ I377), H381 (= H379), H388 (= H386), H423 (= H421)
- binding flavin-adenine dinucleotide: W39 (= W29), P75 (= P65), Q76 (≠ V66), G77 (≠ A67), G78 (= G68), N79 (= N69), T80 (= T70), G81 (= G71), M82 (≠ L72), G85 (= G75), S86 (≠ T76), L139 (≠ F128), G140 (= G129), A141 (≠ S130), C145 (≠ A134), G149 (= G138), N150 (≠ F139), A152 (≠ S141), T153 (= T142), G157 (= G146), G207 (= G196), I212 (= I201), E422 (= E420), N459 (= N457)
- binding zinc ion: H381 (= H379), H388 (= H386), E422 (= E420)
6lpuA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with l-2-hydroxyglutarate (l-2-hg) (see paper)
38% identity, 94% coverage: 28:463/463 of query aligns to 38:465/466 of 6lpuA
- binding flavin-adenine dinucleotide: W39 (= W29), P75 (= P65), G77 (≠ A67), G78 (= G68), N79 (= N69), T80 (= T70), G81 (= G71), G85 (= G75), S86 (≠ T76), L139 (≠ F128), G140 (= G129), A141 (≠ S130), C145 (≠ A134), H146 (≠ M135), G148 (= G137), G149 (= G138), N150 (≠ F139), A152 (≠ S141), T153 (= T142), A155 (= A144), E206 (= E195), G207 (= G196), I211 (= I200), I212 (= I201), E422 (= E420), N459 (= N457)
- binding (2s)-2-hydroxypentanedioic acid: R333 (= R329), T337 (≠ A333), K348 (≠ D344), Y379 (≠ I377), H381 (= H379), H388 (= H386), H423 (= H421)
- binding zinc ion: H381 (= H379), H388 (= H386), E422 (= E420)
6lpqA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with d-malate (d-mal) (see paper)
38% identity, 94% coverage: 28:463/463 of query aligns to 38:465/466 of 6lpqA
- binding flavin-adenine dinucleotide: W39 (= W29), P75 (= P65), G77 (≠ A67), G78 (= G68), N79 (= N69), T80 (= T70), G81 (= G71), G85 (= G75), S86 (≠ T76), L139 (≠ F128), G140 (= G129), A141 (≠ S130), C145 (≠ A134), H146 (≠ M135), G149 (= G138), N150 (≠ F139), A152 (≠ S141), T153 (= T142), A155 (= A144), G157 (= G146), E206 (= E195), G207 (= G196), I211 (= I200), I212 (= I201), E422 (= E420), N459 (= N457)
- binding d-malate: M82 (≠ L72), R333 (= R329), T337 (≠ A333), K348 (≠ D344), Y379 (≠ I377), H381 (= H379), H388 (= H386), E422 (= E420), H423 (= H421)
- binding zinc ion: H381 (= H379), H388 (= H386), E422 (= E420)
6lppA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with d-2-hydroxyglutarate (d-2-hg) (see paper)
38% identity, 94% coverage: 28:463/463 of query aligns to 38:465/466 of 6lppA
- binding (2R)-2-hydroxypentanedioic acid: R333 (= R329), T337 (≠ A333), K348 (≠ D344), Y379 (≠ I377), H381 (= H379), H388 (= H386), N390 (≠ T388), H423 (= H421)
- binding flavin-adenine dinucleotide: W39 (= W29), P75 (= P65), G77 (≠ A67), G78 (= G68), N79 (= N69), T80 (= T70), G81 (= G71), M82 (≠ L72), G85 (= G75), S86 (≠ T76), L139 (≠ F128), G140 (= G129), A141 (≠ S130), C145 (≠ A134), G149 (= G138), N150 (≠ F139), A152 (≠ S141), T153 (= T142), A155 (= A144), G157 (= G146), G207 (= G196), I212 (= I201), E422 (= E420), H423 (= H421)
- binding zinc ion: H381 (= H379), H388 (= H386), E422 (= E420)
Q8N465 D-2-hydroxyglutarate dehydrogenase, mitochondrial; EC 1.1.99.39 from Homo sapiens (Human) (see 7 papers)
38% identity, 94% coverage: 28:463/463 of query aligns to 91:518/521 of Q8N465
- S109 (≠ T46) to W: in D2HGA1; uncertain significance; significant loss of catalytic activity; dbSNP:rs142050154
- N127 (≠ V64) to K: in D2HGA1; uncertain significance; complete loss of catalytic activity; dbSNP:rs762857195
- G131 (= G68) to V: in D2HGA1; uncertain significance; complete loss of catalytic activity
- I147 (≠ M83) to S: in D2HGA1; uncertain significance; severe phenotype; almost complete loss of catalytic activity; dbSNP:rs121434361
- M153 (≠ L89) to T: in D2HGA1; uncertain significance; significant loss of catalytic activity; to V: in D2HGA1; uncertain significance; significant loss of catalytic activity; dbSNP:rs1432270139
- C172 (≠ V108) to Y: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs773735172
- P189 (= P125) to L: in D2HGA1; uncertain significance; almost complete loss of catalytic activity; dbSNP:rs587783517
- A205 (≠ S141) to V: in D2HGA1; uncertain significance; almost complete loss of catalytic activity; dbSNP:rs750889931
- A231 (= A167) to V: in D2HGA1; uncertain significance; significant loss of catalytic activity
- G233 (= G169) to S: in D2HGA1; uncertain significance; no effect on catalytic activity; dbSNP:rs374535734
- D375 (≠ S318) to Y: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs267606759
- R386 (= R329) binding (R)-2-hydroxyglutarate; binding (R)-lactate; binding (R)-malate; mutation to A: Loss of catalytic activity.
- T390 (≠ A333) binding (R)-2-hydroxyglutarate; binding (R)-malate; mutation to A: Significantly reduced catalytic activity.
- V399 (≠ I342) to M: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs746519212
- K401 (≠ D344) binding (R)-2-hydroxyglutarate; binding (R)-malate; mutation to A: Loss of catalytic activity.
- R419 (≠ T362) to H: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs199908032
- A426 (= A372) to T: in D2HGA1; uncertain significance; no effect on catalytic activity; dbSNP:rs146578303
- H434 (= H379) binding Zn(2+); mutation to A: Loss of catalytic activity.
- G436 (= G381) to V: slight reduction in catalytic activity
- N439 (= N384) to D: in D2HGA1; uncertain significance; mild phenotype; moderate reduction in catalytic activity; dbSNP:rs121434362
- H441 (= H386) binding Zn(2+); mutation to A: Loss of catalytic activity.
- N443 (≠ T388) binding (R)-2-hydroxyglutarate; mutation to A: Significantly reduced catalytic activity.
- V444 (≠ A389) to A: in D2HGA1; uncertain significance; severe phenotype; significant reduction in catalytic activity; dbSNP:rs121434360
- A446 (≠ P391) to V: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs746956176
- E475 (= E420) binding Zn(2+); mutation to A: Loss of catalytic activity.
- H476 (= H421) binding (R)-2-hydroxyglutarate; binding (R)-lactate; binding (R)-malate; mutation to A: Loss of catalytic activity.
- G477 (= G422) to R: in D2HGA1; uncertain significance; almost complete loss of catalytic activity; dbSNP:rs1453924640
Sites not aligning to the query:
- 15 R → G: in dbSNP:rs4675887
- 169:521 natural variant: Missing (in D2HGA1; uncertain significance)
- 400:521 natural variant: Missing (in D2HGA1; uncertain significance; complete loss of catalytic activity)
P39976 D-2-hydroxyglutarate--pyruvate transhydrogenase DLD3; D-2HG--pyruvate transhydrogenase DLD3; (R)-2-hydroxyglutarate--pyruvate transhydrogenase; D-lactate dehydrogenase [cytochrome] 3; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.99.40; EC 1.1.2.4 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
30% identity, 99% coverage: 4:462/463 of query aligns to 32:496/496 of P39976
Sites not aligning to the query:
- 17 modified: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)
8jdzA Crystal structure of mldhd in complex with 2-keto-3-methylvaleric acid (see paper)
33% identity, 100% coverage: 1:462/463 of query aligns to 3:454/454 of 8jdzA