SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing WP_099617459.1 NCBI__GCF_002744735.1:WP_099617459.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 20 (the maximum) hits to proteins with known functional sites (download)

P14611 Acetyl-CoA acetyltransferase; Acetoacetyl-CoA thiolase; Beta-ketothiolase; EC 2.3.1.9 from Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337) (Ralstonia eutropha) (see paper)
68% identity, 100% coverage: 1:392/392 of query aligns to 1:392/393 of P14611

query
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P14611

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C88 (= C88) active site, Acyl-thioester intermediate; mutation to S: Almost complete loss of acetoacetyl-CoA thiolase activity.
H156 (= H156) mutation to A: Almost complete loss of acetoacetyl-CoA thiolase activity.
F219 (≠ G219) mutation to A: About 50% loss of acetoacetyl-CoA thiolase activity.; mutation to Y: 2-fold increase of acetoacetyl-CoA thiolase activity.
R221 (= R221) mutation to A: Almost complete loss of acetoacetyl-CoA thiolase activity.
S248 (= S248) mutation to A: About 40% loss of acetoacetyl-CoA thiolase activity.
H349 (= H349) mutation to A: Almost complete loss of acetoacetyl-CoA thiolase activity.
C379 (= C379) mutation to S: Almost complete loss of acetoacetyl-CoA thiolase activity.

4o9cC Crystal structure of beta-ketothiolase (phaa) from ralstonia eutropha h16 (see paper)
68% identity, 100% coverage: 1:392/392 of query aligns to 1:392/393 of 4o9cC

query
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4o9cC

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active site: S88 (≠ C88), H349 (= H349), C379 (= C379), G381 (= G381)
binding coenzyme a: S88 (≠ C88), L148 (= L148), R221 (= R221), F236 (= F236), A244 (= A244), S248 (= S248), L250 (= L250), A319 (= A319), F320 (= F320), H349 (= H349)

P45359 Acetyl-CoA acetyltransferase; Acetoacetyl-CoA thiolase; CaTHL; EC 2.3.1.9 from Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W) (see paper)
61% identity, 100% coverage: 1:392/392 of query aligns to 1:391/392 of P45359

query
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P45359

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K

V77 (≠ A77) mutation to Q: 3-fold increase in thiolase activity, prevents disulfide bond formation under oxidized condition and results in the loss of regulatory mechanism based on redox-switch modulation; when associated with Y-153 and K-286.
C88 (= C88) modified: Disulfide link with 378, In inhibited form
S96 (≠ H96) binding acetate
N153 (= N153) mutation to Y: 3-fold increase in thiolase activity, prevents disulfide bond formation under oxidized condition and results in the loss of regulatory mechanism based on redox-switch modulation; when associated with Q-77 and K-286.
GS 279:280 (≠ AN 280:281) binding acetate
A286 (≠ S287) mutation to K: 3-fold increase in thiolase activity, prevents disulfide bond formation under oxidized condition and results in the loss of regulatory mechanism based on redox-switch modulation; when associated with Q-77 and Y-153.
C378 (= C379) modified: Disulfide link with 88, In inhibited form
A386 (= A387) binding acetate

4xl4A Crystal structure of thiolase from clostridium acetobutylicum in complex with coa (see paper)
61% identity, 100% coverage: 1:392/392 of query aligns to 1:391/392 of 4xl4A

query
sites
4xl4A

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D

L

L

G

G

T

A

A

T

V

A

I

I

K

K

A

E

L

A

L

V

E

K

T

A

G

G

V

I

A

K

G

P

D

E

Q

D

I

V

N

N

E

E

V

V

V

I

L

L

G

G

Q

N

V

V

L

L

T

Q

A

A

G

G

C

L

G

G

Q

Q

N

N

P

P

A

A

R

R

Q

Q

S

A

A

S

I

F

N

K

A

A

G

G

I

L

P

P

A

V

S

E

V

I

P

P

A

A

M

M

T

T

I

I

N

N

K

K

V

V

C
|
C

G

G

S

S

G

G

L

L

K

R

A

T

V

V

H

S

M

L

A

A

V

A

Q

Q

A

I

I

I

R

K

C

A

G

G

D

D

A

A

E

D

M

V

M

I

I

I

A

A

G

G

Q

M

E

E

S

N

M

M

S

S

Q

R

S

A

P

P

H

Y

V

L

L

A

P

N

N

N

S

A

R

R

N

W

G

G

Q

Y

R

R

M

M

G

G

N

N

W

A

S

K

M

F

V

V

D

D

T

E

M

M

I

I

N

T

D

D

G

G

L
|
L

W

W

D

D

A

A

F

F

N

N

D

D

Y

Y

H
|
H

M

M

G

G

V

I

T

T

A

A

E

E

N

N

I

I

V

A

E

E

R

R

Y

W

G

N

V

I

S

S

R

R

E

E

Q

Q

D

D

E

E

F

F

A

A

A

L

A

A

S

S

Q

Q

Q

K

K

K

A

A

V

E

A

E

A

A

R

I

E

K

A

S

G

G

Y

Q

F

F

D

K

G

D

Q

E

I

I

V

V

P

P

V

V

S

V

I

I

P

K

Q

G

R

R

K

K

G

G

D

E

P

-

I

T

V

V

D

D

Q

T

D

D

E

E

G

H

P

P

R
|
R

G

F

G

G

V

S

S

T

A

I

E

E

G

G

L

L

G

A

K

K

L
|
L

R

K

P

P

A

A

F

F

K

K

D

D

G

G

T

T

V

V

T

T

A
|
A

G

G

N

N

A

A

S
|
S

S

G

L

L

N

N

D

D

G

C

A

A

A

V

V

L

L

V

V

I

C

M

S

S

A

A

D

E

K

K

A

A

K

K

E

E

L

L

G

G

L

V

T

K

P

P

L

L

A

A

T

K

I

I

R

V

A

S

H

Y

A

G

N

S

A

A

G

G

V

V

D

D

P

P

S

A

I

I

M

M

G

G

T

Y

G

G

P

P

I

F

P

Y

A

A

S

T

Q

K

R

A

C

A

L

I

K

E

L

K

A

A

G

G

W

W

S

T

V

V

D

D

D

E

L

L

D

D

L

L

V

I

E

E

A

S

N

N

E

E

A

A

F
|
F

A

A

Q

Q

A

S

I

L

S

A

V

V

N

A

R

K

D

D

L

L

G

K

W

F

D

D

T

M

G

N

K

K

V

V

N

N

V

V

N

N

G

G

A

A

I

I

A

A

L

L

G

G

H
|
H

P

P

I

I

G

G

A

A

S

S

G

G

C

A

R

R

I

I

L

L

V

V

S

T

L

L

L

V

H

H

E

A

M

M

V

Q

R

K

R

R

D

D

V

A

H

K

K

K

G

G

L

L

A

A

T

T

L

L

C
x
S

I

I

G
|
G

G

G

M

Q

G

G

V

T

A

A

L

I

A

L

V

L

E

E

R

K

active site: C88 (= C88), H348 (= H349), S378 (≠ C379), G380 (= G381)
binding coenzyme a: L148 (= L148), H156 (= H156), R220 (= R221), L231 (= L232), A243 (= A244), S247 (= S248), F319 (= F320), H348 (= H349)

2vu1A Biosynthetic thiolase from z. Ramigera. Complex of with o-pantheteine- 11-pivalate. (see paper)
59% identity, 99% coverage: 4:391/392 of query aligns to 4:389/391 of 2vu1A

query
sites
2vu1A

V

I

V

V

I

I

V

A

A

S

A

A

R

A

R

R

T

T

A

A

I

V

G

G

I

S

F

F

G

N

G

G

G

A

L

F

S

A

S

N

L

T

R

P

A

A

D

H

Q

E

L

L

G

G

T

A

A

T

V

V

I

I

K

S

A

A

L

V

L

L

E

E

E

R

T

A

G

G

V

V

A

A

G

A

D

G

Q

E

I

V

N

N

E

E

V

V

V

I

L

L

G

G

Q

Q

V

V

L

L

T

P

A

A

G

G

C

E

G

G

Q

Q

N

N

P

P

A

A

R

R

Q

Q

S

A

A

A

I

M

N

K

A

A

G

G

I

V

P

P

A

Q

S

E

V

A

P

T

A

A

M

W

T

G

I

M

N

N

K

Q

V

L

C
|
C

G

G

S

S

G

G

L

L

K

R

A

A

V

V

H

A

M

L

A

G

V

M

Q

Q

A

Q

I

I

R

A

C

T

G

G

D

D

A

A

E

S

M

I

I

V

A

A

G

G

Q

M

E

E

S

S

M

M

S

S

Q

M

S

A

P

P

H

H

V

C

L

-

P

A

N

H

S

L

R

R

N

G

G

G

Q

V

R

K

M

M

G

G

N

D

W

F

S

K

M

M

V

I

D

D

T

T

M

M

I

I

N

K

D

D

G

G

L

L

W

T

D

D

A

A

F

F

N

Y

D

G

Y

Y

H
|
H

M

M

G

G

V

T

T

T

A

A

E

E

N

N

I

V

V

A

E

K

R

Q

Y

W

G

Q

V

L

S

S

R

R

E

D

E

E

Q

Q

D

D

E

A

F

F

A

A

A

V

A

A

S

S

Q

Q

Q

N

K

K

A

A

V

E

A

A

R

Q

E

K

A

D

G

G

Y

R

F

F

D

K

G

D

Q

E

I

I

V

V

P

P

V

F

S

I

I

V

P

K

Q

G

R

R

K

K

G

G

D

D

P

-

I

I

V

T

V

V

D

D

Q

A

D

D

E

E

G

Y

P

I

R

R

G

H

G

G

V

A

S

T

A

L

E

D

G

S

L

M

G

A

K

K

L

L

R

R

P

P

A

A

F
|
F

K

D

K

K

D

E

G

G

T

T

V

V

T

T

A

A

G

G

N

N

A

A

S
|
S

S

G

L

L

N

N

D

D

G

G

A

A

V

A

L

L

V

L

C

M

S

S

A

E

D

A

K

E

A

A

K

S

E

R

L

R

G

G

L

I

T

Q

P

P

L

L

A

G

T

R

I

I

R

V

A

S

H

W

A

A

N

T

A

V

G

G

V

V

D

D

P

P

S

K

I

V

M

M

G

G

T

T

G

G

P

P

I

I

P

P

A

A

S

S

Q

R

R

K

C

A

L

L

K

E

L

R

A

A

G

G

W

W

S

K

V

I

D

G

D

D

L

L

D

D

L

L

V

V

E

E

A

A

N

N

E

E

A
|
A

F
|
F

A

A

Q

Q

A

A

I

C

S

A

V

V

N

N

R

K

D

D

L

L

G

G

W

W

D

D

T

P

G

S

K

I

V

V

N

N

V

V

N

N

G

G

A

A

I

I

A

A

L

I

G

G

H
|
H

P

P

I

I

G

G

A

A

S

S

G

G

C

A

R

R

I

I

L

L

V

N

S

T

L

L

H

F

E

E

M

M

V

K

R

R

D

G

V

A

H

R

K

K

G

G

L

L

A

A

T

T

L

L

C
|
C

I

I

G
|
G

G

G

M

M

G

G

V

V

A

A

L

M

A

C

V

I

E

E

active site: C88 (= C88), H347 (= H349), C377 (= C379), G379 (= G381)
binding pantothenyl-aminoethanol-11-pivalic acid: H155 (= H156), F234 (= F236), S246 (= S248), A317 (= A319), F318 (= F320), H347 (= H349)

2vu2A Biosynthetic thiolase from z. Ramigera. Complex with s-pantetheine-11- pivalate. (see paper)
59% identity, 99% coverage: 4:391/392 of query aligns to 2:387/389 of 2vu2A

query
sites
2vu2A

V

I

V

V

I

I

V

A

A

S

A

A

R

A

R

R

T

T

A

A

I

V

G

G

I

S

F

F

G

N

G

G

G

A

L

F

S

A

S

N

L

T

R

P

A

A

D

H

Q

E

L

L

G

G

T

A

A

T

V

V

I

I

K

S

A

A

L

V

L

L

E

E

E

R

T

A

G

G

V

V

A

A

G

A

D

G

Q

E

I

V

N

N

E

E

V

V

V

I

L

L

G

G

Q

Q

V

V

L

L

T

P

A

A

G

G

C

E

G

G

Q

Q

N

N

P

P

A

A

R

R

Q

Q

S

A

A

A

I

M

N

K

A

A

G

G

I

V

P

P

A

Q

S

E

V

A

P

T

A

A

M

W

T

G

I

M

N

N

K

Q

V

L

C
|
C

G

G

S

S

G

G

L

L

K

R

A

A

V

V

H

A

M

L

A

G

V

M

Q

Q

A

Q

I

I

R

A

C

T

G

G

D

D

A

A

E

S

M

I

I

V

A

A

G

G

Q

M

E

E

S

S

M

M

S

S

Q

M

S

A

P

P

H

H

V

C

L

-

P

A

N

H

S

L

R

R

N

G

G

G

Q

V

R

K

M

M

G

G

N

D

W

F

S

K

M

M

V

I

D

D

T

T

M

M

I

I

N

K

D

D

G

G

L

L

W

T

D

D

A

A

F

F

N

Y

D

G

Y

Y

H
|
H

M
|
M

G

G

V

T

T

T

A

A

E

E

N

N

I

V

V

A

E

K

R

Q

Y

W

G

Q

V

L

S

S

R

R

E

D

E

E

Q

Q

D

D

E

A

F

F

A

A

A

V

A

A

S

S

Q

Q

Q

N

K

K

A

A

V

E

A

A

R

Q

E

K

A

D

G

G

Y

R

F

F

D

K

G

D

Q

E

I

I

V

V

P

P

V

F

S

I

I

V

P

K

Q

G

R

R

K

K

G

G

D

D

P

-

I

I

V

T

V

V

D

D

Q

A

D

D

E

E

G

Y

P

I

R

R

G

H

G

G

V

A

S

T

A

L

E

D

G

S

L

M

G

A

K

K

L

L

R

R

P

P

A

A

F
|
F

K

D

K

K

D

E

G

G

T

T

V

V

T

T

A

A

G

G

N

N

A

A

S
|
S

S
x
G

L

L

N

N

D

D

G

G

A

A

V

A

L

L

V

L

C

M

S

S

A

E

D

A

K

E

A

A

K

S

E

R

L

R

G

G

L

I

T

Q

P

P

L

L

A

G

T

R

I

I

R

V

A

S

H

W

A

A

N

T

A

V

G

G

V

V

D

D

P

P

S

K

I

V

M

M

G

G

T

T

G

G

P

P

I

I

P

P

A

A

S

S

Q

R

R

K

C

A

L

L

K

E

L

R

A

A

G

G

W

W

S

K

V

I

D

G

D

D

L

L

D

D

L

L

V

V

E

E

A

A

N

N

E

E

A

A

F
|
F

A

A

Q

Q

A

A

I

C

S

A

V

V

N

N

R

K

D

D

L

L

G

G

W

W

D

D

T

P

G

S

K

I

V

V

N

N

V

V

N

N

G

G

A

A

I

I

A

A

L

I

G

G

H
|
H

P

P

I

I

G

G

A

A

S

S

G

G

C

A

R

R

I

I

L

L

V

N

S

T

L

L

H

F

E

E

M

M

V

K

R

R

D

G

V

A

H

R

K

K

G

G

L

L

A

A

T

T

L

L

C
|
C

I

I

G
|
G

G

G

M

M

G

G

V

V

A

A

L

M

A

C

V

I

E

E

active site: C86 (= C88), H345 (= H349), C375 (= C379), G377 (= G381)
binding (3R)-3-hydroxy-2,2-dimethyl-4-oxo-4-({3-oxo-3-[(2-sulfanylethyl)amino]propyl}amino)butyl 2,2-dimethylpropanoate: H153 (= H156), M154 (= M157), F232 (= F236), S244 (= S248), G245 (≠ S249), F316 (= F320), H345 (= H349)

1dm3A Acetylated biosynthetic thiolase from zoogloea ramigera in complex with acetyl-coa (see paper)
59% identity, 99% coverage: 4:391/392 of query aligns to 2:387/389 of 1dm3A

query
sites
1dm3A

V

I

V

V

I

I

V

A

A

S

A

A

R

A

R

R

T

T

A

A

I

V

G

G

I

S

F

F

G

N

G

G

G

A

L

F

S

A

S

N

L

T

R

P

A

A

D

H

Q

E

L

L

G

G

T

A

A

T

V

V

I

I

K

S

A

A

L

V

L

L

E

E

E

R

T

A

G

G

V

V

A

A

G

A

D

G

Q

E

I

V

N

N

E

E

V

V

V

I

L

L

G

G

Q

Q

V

V

L

L

T

P

A

A

G

G

C

E

G

G

Q

Q

N

N

P

P

A

A

R

R

Q

Q

S

A

A

A

I

M

N

K

A

A

G

G

I

V

P

P

A

Q

S

E

V

A

P

T

A

A

M

W

T

G

I

M

N

N

K

Q

V

L

C
|
C

G

G

S

S

G

G

L

L

K

R

A

A

V

V

H

A

M

L

A

G

V

M

Q

Q

A

Q

I

I

R

A

C

T

G

G

D

D

A

A

E

S

M

I

I

V

A

A

G

G

Q

M

E

E

S

S

M

M

S

S

Q

M

S

A

P

P

H

H

V

C

L

-

P

A

N

H

S

L

R

R

N

G

G

G

Q

V

R

K

M

M

G

G

N

D

W

F

S

K

M

M

V

I

D

D

T

T

M

M

I

I

N

K

D

D

G

G

L
|
L

W

T

D

D

A

A

F

F

N

Y

D

G

Y

Y

H
|
H

M
|
M

G

G

V

T

T

T

A

A

E

E

N

N

I

V

V

A

E

K

R

Q

Y

W

G

Q

V

L

S

S

R

R

E

D

E

E

Q

Q

D

D

E

A

F

F

A

A

A

V

A

A

S

S

Q

Q

Q

N

K

K

A

A

V

E

A

A

R

Q

E

K

A

D

G

G

Y

R

F

F

D

K

G

D

Q

E

I

I

V

V

P

P

V

F

S

I

I

V

P

K

Q

G

R

R

K

K

G

G

D

D

P

-

I

I

V

T

V

V

D

D

Q

A

D

D

E

E

G

Y

P

I

R
|
R

G

H

G

G

V

A

S

T

A

L

E

D

G
x
S

L
x
M

G

A

K

K

L

L

R

R

P

P

A

A

F

F

K

D

K

K

D

E

G

G

T

T

V

V

T

T

A
|
A

G

G

N

N

A

A

S
|
S

S

G

L

L

N

N

D

D

G

G

A

A

V

A

L

L

V

L

C

M

S

S

A

E

D

A

K

E

A

A

K

S

E

R

L

R

G

G

L

I

T

Q

P

P

L

L

A

G

T

R

I

I

R

V

A

S

H

W

A

A

N

T

A

V

G

G

V

V

D

D

P

P

S

K

I

V

M
|
M

G

G

T

T

G

G

P

P

I

I

P

P

A

A

S

S

Q

R

R

K

C

A

L

L

K

E

L

R

A

A

G

G

W

W

S

K

V

I

D

G

D

D

L

L

D

D

L

L

V

V

E

E

A

A

N

N

E

E

A
|
A

F
|
F

A

A

Q

Q

A

A

I

C

S

A

V

V

N

N

R

K

D

D

L

L

G

G

W

W

D

D

T

P

G

S

K

I

V

V

N

N

V

V

N

N

G

G

A

A

I

I

A

A

L

I

G

G

H
|
H

P

P

I

I

G

G

A

A

S

S

G

G

C

A

R

R

I

I

L

L

V

N

S

T

L

L

H

F

E

E

M

M

V

K

R

R

D

G

V

A

H

R

K

K

G

G

L

L

A

A

T

T

L

L

C
|
C

I

I

G
|
G

G

G

M

M

G

G

V

V

A

A

L

M

A

C

V

I

E

E

active site: C86 (= C88), H345 (= H349), C375 (= C379), G377 (= G381)
binding acetyl coenzyme *a: C86 (= C88), L145 (= L148), H153 (= H156), M154 (= M157), R217 (= R221), S224 (≠ G228), M225 (≠ L229), A240 (= A244), S244 (= S248), M285 (= M289), A315 (= A319), F316 (= F320), H345 (= H349), C375 (= C379)

1dlvA Biosynthetic thiolase from zoogloea ramigera in complex with coa (see paper)
59% identity, 99% coverage: 4:391/392 of query aligns to 2:387/389 of 1dlvA

query
sites
1dlvA

V

I

V

V

I

I

V

A

A

S

A

A

R

A

R

R

T

T

A

A

I

V

G

G

I

S

F

F

G

N

G

G

G

A

L

F

S

A

S

N

L

T

R

P

A

A

D

H

Q

E

L

L

G

G

T

A

A

T

V

V

I

I

K

S

A

A

L

V

L

L

E

E

E

R

T

A

G

G

V

V

A

A

G

A

D

G

Q

E

I

V

N

N

E

E

V

V

V

I

L

L

G

G

Q

Q

V

V

L

L

T

P

A

A

G

G

C

E

G

G

Q

Q

N

N

P

P

A

A

R

R

Q

Q

S

A

A

A

I

M

N

K

A

A

G

G

I

V

P

P

A

Q

S

E

V

A

P

T

A

A

M

W

T

G

I

M

N

N

K

Q

V

L

C
|
C

G

G

S

S

G

G

L

L

K

R

A

A

V

V

H

A

M

L

A

G

V

M

Q

Q

A

Q

I

I

R

A

C

T

G

G

D

D

A

A

E

S

M

I

I

V

A

A

G

G

Q

M

E

E

S

S

M

M

S

S

Q

M

S

A

P

P

H

H

V

C

L

-

P

A

N

H

S

L

R

R

N

G

G

G

Q

V

R

K

M

M

G

G

N

D

W

F

S

K

M

M

V

I

D

D

T

T

M

M

I

I

N

K

D

D

G

G

L
|
L

W

T

D

D

A

A

F

F

N

Y

D

G

Y

Y

H
|
H

M
|
M

G

G

V

T

T

T

A

A

E

E

N

N

I

V

V

A

E

K

R

Q

Y

W

G

Q

V

L

S

S

R

R

E

D

E

E

Q

Q

D

D

E

A

F

F

A

A

A

V

A

A

S

S

Q

Q

Q

N

K

K

A

A

V

E

A

A

R

Q

E

K

A

D

G

G

Y

R

F

F

D

K

G

D

Q

E

I

I

V

V

P

P

V

F

S

I

I

V

P

K

Q

G

R

R

K

K

G

G

D

D

P

-

I

I

V

T

V

V

D

D

Q

A

D

D

E

E

G

Y

P

I

R
|
R

G

H

G

G

V

A

S

T

A

L

E

D

G

S

L

M

G

A

K

K

L
|
L

R

R

P

P

A

A

F

F

K

D

K

K

D

E

G

G

T

T

V

V

T

T

A
|
A

G

G

N

N

A

A

S
|
S

S

G

L

L

N

N

D

D

G

G

A

A

V

A

L

L

V

L

C

M

S

S

A

E

D

A

K

E

A

A

K

S

E

R

L

R

G

G

L

I

T

Q

P

P

L

L

A

G

T

R

I

I

R

V

A

S

H

W

A

A

N

T

A

V

G

G

V

V

D

D

P

P

S

K

I

V

M

M

G

G

T

T

G

G

P

P

I

I

P

P

A

A

S

S

Q

R

R

K

C

A

L

L

K

E

L

R

A

A

G

G

W

W

S

K

V

I

D

G

D

D

L

L

D

D

L

L

V

V

E

E

A

A

N

N

E

E

A

A

F

F

A

A

Q

Q

A

A

I

C

S

A

V

V

N

N

R

K

D

D

L

L

G

G

W

W

D

D

T

P

G

S

K

I

V

V

N

N

V

V

N

N

G

G

A

A

I

I

A

A

L

I

G

G

H
|
H

P

P

I

I

G

G

A

A

S

S

G

G

C

A

R

R

I

I

L

L

V

N

S

T

L

L

H

F

E

E

M

M

V

K

R

R

D

G

V

A

H

R

K

K

G

G

L

L

A

A

T

T

L

L

C
|
C

I

I

G
|
G

G

G

M

M

G

G

V

V

A

A

L

M

A

C

V

I

E

E

active site: C86 (= C88), H345 (= H349), C375 (= C379), G377 (= G381)
binding coenzyme a: C86 (= C88), L145 (= L148), H153 (= H156), M154 (= M157), R217 (= R221), L228 (= L232), A240 (= A244), S244 (= S248), H345 (= H349)

1ou6A Biosynthetic thiolase from zoogloea ramigera in complex with acetyl-o- pantetheine-11-pivalate
59% identity, 99% coverage: 4:391/392 of query aligns to 5:390/392 of 1ou6A

query
sites
1ou6A

V

I

V

V

I

I

V

A

A

S

A

A

R

A

R

R

T

T

A

A

I

V

G

G

I

S

F

F

G

N

G

G

G

A

L

F

S

A

S

N

L

T

R

P

A

A

D

H

Q

E

L

L

G

G

T

A

A

T

V

V

I

I

K

S

A

A

L

V

L

L

E

E

E

R

T

A

G

G

V

V

A

A

G

A

D

G

Q

E

I

V

N

N

E

E

V

V

V

I

L

L

G

G

Q

Q

V

V

L

L

T

P

A

A

G

G

C

E

G

G

Q

Q

N

N

P

P

A

A

R

R

Q

Q

S

A

A

A

I

M

N

K

A

A

G

G

I

V

P

P

A

Q

S

E

V

A

P

T

A

A

M

W

T

G

I

M

N

N

K

Q

V

L

C
|
C

G

G

S

S

G

G

L

L

K

R

A

A

V

V

H

A

M

L

A

G

V

M

Q

Q

A

Q

I

I

R

A

C

T

G

G

D

D

A

A

E

S

M

I

I

V

A

A

G

G

Q

M

E

E

S

S

M

M

S

S

Q

M

S

A

P

P

H

H

V

C

L

-

P

A

N

H

S

L

R

R

N

G

G

G

Q

V

R

K

M

M

G

G

N

D

W

F

S

K

M

M

V

I

D

D

T

T

M

M

I

I

N

K

D

D

G

G

L
|
L

W

T

D

D

A

A

F

F

N

Y

D

G

Y

Y

H
|
H

M
|
M

G

G

V

T

T

T

A

A

E

E

N

N

I

V

V

A

E

K

R

Q

Y

W

G

Q

V

L

S

S

R

R

E

D

E

E

Q

Q

D

D

E

A

F

F

A

A

A

V

A

A

S

S

Q

Q

Q

N

K

K

A

A

V

E

A

A

R

Q

E

K

A

D

G

G

Y

R

F

F

D

K

G

D

Q

E

I

I

V

V

P

P

V

F

S

I

I

V

P

K

Q

G

R

R

K

K

G

G

D

D

P

-

I

I

V

T

V

V

D

D

Q

A

D

D

E

E

G

Y

P

I

R

R

G

H

G

G

V

A

S

T

A

L

E

D

G

S

L

M

G

A

K

K

L

L

R

R

P

P

A

A

F
|
F

K

D

K

K

D

E

G

G

T

T

V

V

T

T

A
|
A

G

G

N

N

A

A

S
|
S

S

G

L

L

N

N

D

D

G

G

A

A

V

A

L

L

V

L

C

M

S

S

A

E

D

A

K

E

A

A

K

S

E

R

L

R

G

G

L

I

T

Q

P

P

L

L

A

G

T

R

I

I

R

V

A

S

H

W

A

A

N

T

A

V

G

G

V

V

D

D

P

P

S

K

I

V

M

M

G

G

T

T

G

G

P

P

I

I

P

P

A

A

S

S

Q

R

R

K

C

A

L

L

K

E

L

R

A

A

G

G

W

W

S

K

V

I

D

G

D

D

L

L

D

D

L

L

V

V

E

E

A

A

N

N

E

E

A
|
A

F
|
F

A

A

Q

Q

A

A

I

C

S

A

V

V

N

N

R

K

D

D

L

L

G

G

W

W

D

D

T

P

G

S

K

I

V

V

N

N

V

V

N

N

G

G

A

A

I

I

A

A

L

I

G

G

H
|
H

P

P

I

I

G

G

A

A

S

S

G

G

C

A

R

R

I

I

L

L

V

N

S

T

L

L

H

F

E

E

M

M

V

K

R

R

D

G

V

A

H

R

K

K

G

G

L

L

A

A

T

T

L

L

C
|
C

I

I

G
|
G

G

G

M

M

G

G

V

V

A

A

L

M

A

C

V

I

E

E

active site: C89 (= C88), H348 (= H349), C378 (= C379), G380 (= G381)
binding pantothenyl-aminoethanol-acetate pivalic acid: L148 (= L148), H156 (= H156), M157 (= M157), F235 (= F236), A243 (= A244), S247 (= S248), A318 (= A319), F319 (= F320), H348 (= H349)

2wkuA Biosynthetic thiolase from z. Ramigera. The n316h mutant. (see paper)
59% identity, 99% coverage: 4:391/392 of query aligns to 2:387/389 of 2wkuA

query
sites
2wkuA

V

I

V

V

I

I

V

A

A
x
S

A
|
A

R

A

R

R

T

T

A

A

I

V

G

G

I

S

F

F

G

N

G

G

G

A

L

F

S

A

S

N

L

T

R

P

A

A

D

H

Q

E

L

L

G

G

T

A

A

T

V

V

I

I

K

S

A

A

L

V

L

L

E

E

E
x
R

T

A

G

G

V

V

A

A

G

A

D

G

Q

E

I

V

N

N

E

E

V

V

V

I

L

L

G

G

Q

Q

V

V

L

L

T

P

A

A

G

G

C

E

G

G

Q

Q

N

N

P

P

A

A

R

R

Q

Q

S

A

A

A

I

M

N

K

A

A

G

G

I

V

P

P

A

Q

S

E

V

A

P

T

A

A

M

W

T

G

I

M

N

N

K

Q

V

L

C
|
C

G

G

S

S

G

G

L

L

K

R

A

A

V

V

H

A

M

L

A

G

V

M

Q

Q

A

Q

I

I

R

A

C

T

G

G

D

D

A

A

E

S

M

I

I

V

A

A

G

G

Q

M

E

E

S

S

M

M

S

S

Q

M

S

A

P

P

H

H

V

C

L

-

P

A

N

H

S

L

R

R

N

G

G

G

Q

V

R

K

M

M

G

G

N

D

W

F

S

K

M

M

V

I

D

D

T

T

M

M

I

I

N

K

D

D

G

G

L

L

W

T

D

D

A

A

F

F

N

Y

D

G

Y

Y

H

H

M

M

G

G

V

T

T

T

A

A

E

E

N

N

I

V

V

A

E

K

R

Q

Y

W

G

Q

V

L

S

S

R

R

E

D

E

E

Q

Q

D

D

E

A

F

F

A

A

A

V

A

A

S

S

Q

Q

Q

N

K
|
K

A

A

V

E

A

A

R

Q

E

K

A

D

G

G

Y

R

F

F

D

K

G
x
D

Q

E

I

I

V

V

P

P

V

F

S

I

I

V

P

K

Q

G

R

R

K

K

G

G

D

D

P

-

I

I

V

T

V

V

D

D

Q

A

D

D

E

E

G

Y

P

I

R

R

G

H

G

G

V

A

S

T

A

L

E

D

G

S

L

M

G

A

K

K

L

L

R

R

P

P

A

A

F

F

K

D

K

K

D

E

G

G

T

T

V

V

T

T

A

A

G

G

N

N

A

A

S

S

S

G

L

L

N

N

D

D

G

G

A

A

V

A

L

L

V

L

C

M

S

S

A

E

D

A

K

E

A

A

K

S

E

R

L

R

G

G

L

I

T

Q

P

P

L

L

A

G

T

R

I

I

R

V

A

S

H

W

A

A

N

T

A

V

G

G

V
|
V

D
|
D

P

P

S

K

I

V

M

M

G

G

T
|
T

G

G

P

P

I

I

P

P

A

A

S

S

Q

R

R

K

C

A

L

L

K

E

L

R

A

A

G

G

W

W

S

K

V

I

D

G

D

D

L

L

D

D

L

L

V

V

E

E

A

A

N

H

E

E

A

A

F

F

A

A

Q

Q

A

A

I

C

S

A

V

V

N

N

R

K

D

D

L

L

G

G

W

W

D

D

T
x
P

G
x
S

K

I

V
|
V

N

N

V
|
V

N

N

G

G

A

A

I

I

A

A

L

I

G

G

H
|
H

P

P

I

I

G

G

A

A

S

S

G

G

C

A

R

R

I

I

L

L

V

N

S

T

L

L

H
x
F

E

E

M

M

V

K

R

R

D

G

V

A

H

R

K

K

G

G

L

L

A

A

T

T

L

L

C
|
C

I

I

G
|
G

G

G

M

M

G

G

V

V

A

A

L

M

A

C

V

I

E

E

active site: C86 (= C88), H345 (= H349), C375 (= C379), G377 (= G381)
binding D-mannose: S6 (≠ A8), A7 (= A9), R38 (≠ E40), K182 (= K185), D194 (≠ G197), V280 (= V284), D281 (= D285), T287 (= T291), P331 (≠ T335), S332 (≠ G336), V334 (= V338), V336 (= V340), F360 (≠ H364)

1m1oA Crystal structure of biosynthetic thiolase, c89a mutant, complexed with acetoacetyl-coa (see paper)
59% identity, 99% coverage: 4:391/392 of query aligns to 3:388/390 of 1m1oA

query
sites
1m1oA

V

I

V

V

I

I

V

A

A

S

A

A

R

A

R

R

T

T

A

A

I

V

G

G

I

S

F

F

G

N

G

G

G

A

L

F

S

A

S

N

L

T

R

P

A

A

D

H

Q

E

L

L

G

G

T

A

A

T

V

V

I

I

K

S

A

A

L

V

L

L

E

E

E

R

T

A

G

G

V

V

A

A

G

A

D

G

Q

E

I

V

N

N

E

E

V

V

V

I

L

L

G

G

Q

Q

V

V

L

L

T

P

A

A

G

G

C

E

G

G

Q

Q

N

N

P

P

A

A

R

R

Q

Q

S

A

A

A

I

M

N

K

A

A

G

G

I

V

P

P

A

Q

S

E

V

A

P

T

A

A

M

W

T

G

I

M

N

N

K

Q

V
x
L

C
x
A

G

G

S

S

G

G

L

L

K

R

A

A

V

V

H

A

M

L

A

G

V

M

Q

Q

A

Q

I

I

R

A

C

T

G

G

D

D

A

A

E

S

M

I

I

V

A

A

G

G

Q

M

E

E

S

S

M

M

S

S

Q

M

S

A

P

P

H

H

V

C

L

-

P

A

N

H

S

L

R

R

N

G

G

G

Q

V

R

K

M

M

G

G

N

D

W

F

S

K

M

M

V

I

D

D

T

T

M

M

I

I

N

K

D

D

G

G

L
|
L

W

T

D

D

A

A

F

F

N

Y

D

G

Y

Y

H
|
H

M
|
M

G

G

V

T

T

T

A

A

E

E

N

N

I

V

V

A

E

K

R

Q

Y

W

G

Q

V

L

S

S

R

R

E

D

E

E

Q

Q

D

D

E

A

F

F

A

A

A

V

A

A

S

S

Q

Q

Q

N

K

K

A

A

V

E

A

A

R

Q

E

K

A

D

G

G

Y

R

F

F

D

K

G

D

Q

E

I

I

V

V

P

P

V

F

S

I

I

V

P

K

Q

G

R

R

K

K

G

G

D

D

P

-

I

I

V

T

V

V

D

D

Q

A

D

D

E

E

G

Y

P

I

R
|
R

G

H

G

G

V

A

S

T

A

L

E

D

G
x
S

L
x
M

G

A

K

K

L

L

R

R

P

P

A

A

F

F

K

D

K

K

D

E

G

G

T

T

V

V

T

T

A
|
A

G
|
G

N

N

A

A

S
|
S

S

G

L

L

N

N

D

D

G

G

A

A

V

A

L

L

V

L

C

M

S

S

A

E

D

A

K

E

A

A

K

S

E

R

L

R

G

G

L

I

T

Q

P

P

L

L

A

G

T

R

I

I

R

V

A

S

H

W

A

A

N

T

A

V

G

G

V

V

D

D

P

P

S

K

I

V

M

M

G

G

T

T

G

G

P

P

I

I

P

P

A

A

S

S

Q

R

R

K

C

A

L

L

K

E

L

R

A

A

G

G

W

W

S

K

V

I

D

G

D

D

L

L

D

D

L

L

V

V

E

E

A

A

N

N

E

E

A
|
A

F
|
F

A

A

Q

Q

A

A

I

C

S

A

V

V

N

N

R

K

D

D

L

L

G

G

W

W

D

D

T

P

G

S

K

I

V

V

N

N

V

V

N

N

G

G

A

A

I

I

A

A

L

I

G

G

H
|
H

P

P

I

I

G

G

A

A

S

S

G

G

C

A

R

R

I

I

L

L

V

N

S

T

L

L

H

F

E

E

M

M

V

K

R

R

D

G

V

A

H

R

K

K

G

G

L

L

A

A

T

T

L

L

C
|
C

I
|
I

G
|
G

G

G

M

M

G

G

V

V

A

A

L

M

A

C

V

I

E

E

active site: A87 (≠ C88), H346 (= H349), C376 (= C379), G378 (= G381)
binding acetoacetyl-coenzyme a: L86 (≠ V87), A87 (≠ C88), L146 (= L148), H154 (= H156), M155 (= M157), R218 (= R221), S225 (≠ G228), M226 (≠ L229), A241 (= A244), G242 (= G245), S245 (= S248), A316 (= A319), F317 (= F320), H346 (= H349), I377 (= I380), G378 (= G381)

P07097 Acetyl-CoA acetyltransferase; Acetoacetyl-CoA thiolase; Beta-ketothiolase; EC 2.3.1.9 from Shinella zoogloeoides (Crabtreella saccharophila) (see 2 papers)
58% identity, 99% coverage: 5:391/392 of query aligns to 6:390/392 of P07097

query
sites
P07097

V

I

I

V

V

I

A

A

A

S

R

A

R

R

T

T

A

A

I

V

G

G

I

S

F

F

G

N

G

G

G

A

L

F

S

A

S

N

L

T

R

P

A

A

D

H

Q

E

L

L

G

G

T

A

A

T

V

V

I

I

K

S

A

A

L

V

L

L

E

E

E

R

T

A

G

G

V

V

A

A

G

A

D

G

Q

E

I

V

N

N

E

E

V

V

V

I

L

L

G

G

Q

Q

V

V

L

L

T

P

A

A

G

G

C

E

G

G

Q
|
Q

N

N

P

P

A

A

R

R

Q

Q

S

A

A

A

I

M

N

K

A

A

G

G

I

V

P

P

A

Q

S

E

V

A

P

T

A

A

M

W

T

G

I

M

N

N

K

Q

V

L

C
|
C

G

G

S

S

G

G

L

L

K

R

A

A

V

V

H

A

M

L

A

G

V

M

Q

Q

A

Q

I

I

R

A

C

T

G

G

D

D

A

A

E

S

M

I

I

V

A

A

G

G

Q

M

E

E

S

S

M

M

S

S

Q

M

S

A

P

P

H

H

V

C

L

-

P

A

N

H

S

L

R

A

N

G

G

G

Q

V

R

K

M

M

G

G

N

D

W

F

S

K

M

M

V

I

D

D

T

T

M

M

I

I

N

K

D

D

G

G

L

L

W

T

D

D

A

A

F

F

N

Y

D

G

Y

Y

H

H

M

M

G

G

V

T

T

T

A

A

E

E

N

N

I

V

V

A

E

K

R

Q

Y

W

G

Q

V

L

S

S

R

R

E

D

E

E

Q

Q

D

D

E

A

F

F

A

A

A

V

A

A

S

S

Q

Q

Q

N

K

K

A

A

V

E

A

A

R

Q

E

K

A

D

G

G

Y

R

F

F

D

K

G

D

Q

E

I

I

V

V

P

P

V

F