SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_101446304.1 NCBI__GCF_002846395.1:WP_101446304.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

P11551 L-fucose-proton symporter; 6-deoxy-L-galactose permease; L-fucose permease; L-fucose-H(+) symport protein from Escherichia coli (strain K12) (see 3 papers)
30% identity, 93% coverage: 2:400/431 of query aligns to 4:406/438 of P11551

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P11551
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D

Sites not aligning to the query:

Query Sequence

>WP_101446304.1 NCBI__GCF_002846395.1:WP_101446304.1
MTKVATSSNSKTGQENASGGSARPIIIIGVLFFIFGFVTWLNAILIPYFKISLELNNFQS
YLVAFAFYISYFVMSIPSAWVLKVTGFKKGMSVGLLVMAAGALLFVPAALTRTLELFLIG
LFVQGTGLALLQTASNPYITILGPLESAAKRISIMGVSNKIGGILGSIILGAIVLSNADE
VVAKLELMSAAEKAVELNAMASKVIMPYLIITGALVALAIVIYFSSLPEVDTDQEDETVA
AANVNKTSILQFPHLLLGAFTMFLYVGVEVMAGDTIVSYGAAQDISFKTAKFFTSFTLGA
MVVAYFVGVATIPKYIRQDKALQISAILGVVFTVAAIMTSGIVSVTFIALLGLANALMWP
AIFPLAIADLGRFTKIGSSLIIMGIAGGAILPLIYGALADKINPQQAYWIMVPCYLFILY
YAMAGHKIRTK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory