SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_104913803.1 NCBI__GCF_002950575.1:WP_104913803.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4dlfA Crystal structure of an amidohydrolase (cog3618) from burkholderia multivorans (target efi-500235) with bound zn, space group p3221
32% identity, 98% coverage: 2:280/285 of query aligns to 2:286/287 of 4dlfA

query
sites
4dlfA
M
 
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I
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D
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S
H
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Y
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A
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A
E
 
D
Q
 
Y
D
 
P
W
 
W
M
 
-
V
 
I
G
 
G
D
 
A
A
 
G
V
 
M
A
 
G
P
 
V
I
 
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A
R
 
R
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D
F
 
Y
T
 
L
M
 
P
A
 
D
D
 
A
M
 
L
D
x
H
P
 
P
V
 
L
L
 
M
E
x
H
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A
S
 
Q
H
 
A
I
 
L
D
 
G
N
 
A
T
 
S
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I
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A
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V
Q
 
Q
T
 
A
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R
A
 
A
V
 
G
M
 
R
E
 
D
E
 
E
T
 
T
P
 
A
E
 
F
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L
L
 
L
D
 
E
I
 
L
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A
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x
C
D
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D
H
 
E
P
 
A
K
 
R
V
 
I
A
 
A
A
 
A
V
 
V
V
 
V
G
 
G
W
 
W
L
 
E
D
 
D
M
 
L
E
 
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A
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-
D
 
-
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-
T
 
-
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P
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Q
L
 
L
E
 
A
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E
H
 
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V
A
 
A
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E
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E
 
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K
 
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K
L
 
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H
L
 
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A
 
L
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A
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A
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A
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A
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A
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C
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C
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A
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A
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L
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D
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A
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F
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G
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P
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M
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D
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W
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C
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L
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L
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A
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A
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C
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A
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L

Query Sequence

>WP_104913803.1 NCBI__GCF_002950575.1:WP_104913803.1
MMRIDSHHHVWDLSVREQDWMVGDAVAPISRTFTMADMDPVLEQSHIDNTVIVQTVAVME
ETPEFLDIARDHPKVAAVVGWLDMESDDITPALESHLAHPESKRLVSIRDLAQYQEDPNW
LSRDSVVRNIQRLGERGLSYDLLTLPPQLPAAIDAVKRSPDVQFVLDHISKPYIADGEID
AWAKDMRALAQYPNVAVKISGMVTEAKWDDWTPETFRPYVDVCAEAFGPSRLMFGSDWPV
SLLGGQYADIVGIVETLTADWSEAEQEAIWAHTAISAYRLEGLLK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory