SitesBLAST

6bi4C 2.9 angstrom resolution crystal structure of dtdp-glucose 4,6- dehydratase (rfbb) from bacillus anthracis str. Ames in complex with NAD. (see paper)
50% identity, 98% coverage: 1:322/327 of query aligns to 2:311/311 of 6bi4C

query
sites
6bi4C

M

M

K

N

L

I

F

L

V

V

T

T

G
|
G

G

G

A

A

G
|
G

F
|
F

I
|
I

G

G

S

S

N

N

F

F

V

V

R

H

M

Y

A

M

L

L

G

-

R

-

L

-

P

Q

G

S

L

Y

E

E

E

T

A

Y

E

K

I

I

T

I

V

N

F

F

D
|
D

A
|
A

L
|
L

T
|
T

Y

Y

S
|
S

G
|
G

T

N

L

L

T

N

N

N

L

V

E

K

S

S

V

I

A

Q

N

D

H

H

P

P

R

N

F

Y

R

Y

F

F

I

V

Q

K

G

G

D
x
E

I
|
I

R
x
Q

D
x
N

M

-

P
x
G

A
x
E

L

L

E

E

H

H

V

V

A

I

G

K

H

E

-

R

-

D

-

V

D

Q

A

V

I

I

V

V

H

N

F
|
F

A
|
A

E

E

S

S

H

I

V

P

D

-

R

-

S

-

V

-

S

-

D

-

A

-

G

-

I

-

F

F

V

Y

D

D

T
|
T

N

N

V

V

A

I

G

G

T

T

Q

V

K

T

L

L

E

E

A

L

A

V

R

K

Q

K

L

Y

G

P

T

H

D

I

R

K

F

L

L

V

Q

Q

V
|
V

S

S

T
|
T

D
|
D

E
|
E

V

V

Y

Y

G

G

S

S

I

L

D

G

E

K

-

T

G

G

E

R

W

F

D

T

E

E

E

T

P

P

L

L

L

A

P

P

N

N

S

S

P

P

Y
|
Y

A

S

S

S

K
|
K

A

A

A

S

S

A

D

D

L

M

M

I

V

A

R

L

A

A

Y

Y

H

Y

Q

K

T

T

H

Y

G

Q

L

L

D

P

T

V

V

I

M

V

T

T

R

R

C
|
C

S
|
S

N

N

Y

Y

G

G

P

P

H

Y

H

Q

F

Y

P

P

E

E

K

K

V

L

I

I

P

P

L

L

F

M

V

V

T

T

N

N

L

A

L

L

D

E

G

G

H

K

P

K

V

L

P

P

L

L

Y

Y

G

G

D

D

G

G

G

L

N

N

Q

V

R

R

D

D

W

W

L

L

H

H

V

V

D

T

D

D

H

H

C

C

R

S

G

A

I

I

A

D

L

V

V

V

L

L

Q

H

K

K

G

G

T

R

S

V

G

G

E

E

V

V

Y

Y

N

N

I

I

G

G

G

N

T

N

E

E

L

K

T

T

N

N

K

V

E

E

L

V

T

V

H

E

M

Q

L

I

G

T

L

L

T

L

G

G

R

K

D

T

D

K

S

K

F

D

I

I

S

E

H

Y

V

V

E

T

D

D

R

-

L

-

G

G

H

H

D

D

R

R

Y

Y

C

A

V

I

S

N

I

A

D

E

K

K

I

M

S

K

R

N

E

E

L

F

G

D

Y

W

A

E

P

P

E

K

V

Y

D

T

F

F

Q

E

E

Q

G

G

L

L

A

Q

D

E

V

T

V

V

Q

Q

W

W

Y

Y

R

E

D

K

N

N

R

E

G

E

W

W

E

K

P

P

L

L

K

K

active site: T117 (= T127), D118 (= D128), E119 (= E129), Y142 (= Y151), K146 (= K155)
binding beta-D-fructofuranose: Q62 (≠ R65), N63 (≠ D66), G64 (≠ P68), E65 (≠ A69)
binding nicotinamide-adenine-dinucleotide: G8 (= G7), G11 (= G10), F12 (= F11), I13 (= I12), D34 (= D37), A35 (= A38), L36 (= L39), T37 (= T40), S39 (= S42), G40 (= G43), E60 (≠ D63), I61 (= I64), Q62 (≠ R65), F82 (= F83), A83 (= A84), A84 (= A85), T92 (= T102), V115 (= V125), T117 (= T127), Y142 (= Y151), K146 (= K155), C169 (= C178), S170 (= S179)

6bi4B 2.9 angstrom resolution crystal structure of dtdp-glucose 4,6- dehydratase (rfbb) from bacillus anthracis str. Ames in complex with NAD. (see paper)
50% identity, 98% coverage: 1:322/327 of query aligns to 2:310/310 of 6bi4B

query
sites
6bi4B

M

M

K

N

L

I

F

L

V

V

T

T

G
|
G

G

G

A

A

G
|
G

F
|
F

I
|
I

G

G

S

S

N

N

F

F

V

V

R

H

M

Y

A

M

L

L

G

-

R

-

L

-

P

Q

G

S

L

Y

E

E

E

T

A

Y

E

K

I

I

T

I

V

N

F

F

D
|
D

A
|
A

L
|
L

T
|
T

Y

Y

S
|
S

G
|
G

T

N

L

L

T

N

N

N

L

V

E

K

S

S

V

I

A

Q

N

D

H

H

P

P

R

N

F

Y

R

Y

F

F

I

V

Q

K

G

G

D
x
E

I

I

R
x
Q

D
x
N

M

-

P

G

A

E

L

L

E

E

H

H

V

V

A

I

G

K

H

E

-

R

-

D

-

V

D

Q

A

V

I

I

V

V

H

N

F
|
F

A
|
A

E

E

S

S

H

I

V

P

D

-

R

-

S

-

V

-

S

-

D

-

A

-

G

-

I

-

F

F

V

Y

D

D

T
|
T

N

N

V

V

A

I

G

G

T

T

Q

V

K

T

L

L

E

E

A

L

A

V

R

K

Q

K

L

Y

G

P

T

H

D

I

R

K

F

L

L

V

Q

Q

V

V

S
|
S

T
|
T

D
|
D

E
|
E

V

V

Y

Y

G

G

S

S

I

L

D

G

E

K

-

T

G

G

E

R

W

F

D

T

E

E

E

T

P

P

L

L

L

A

P

P

N

N

S

S

P

P

Y
|
Y

A

S

S

S

K
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K

A

A

A

S

S

A

D

D

L

M

M

I

V

A

R

L

A

A

Y

Y

H

Y

Q

K

T

T

H

Y

G

Q

L

L

D

P

T

V

V

I

M

V

T

T

R

R

C
|
C

S

S

N

N

Y

Y

G

G

P

P

H

Y

H

Q

F

Y

P

P

E

E

K

K

V

L

I

I

P

P

L

L

F

M

V

V

T

T

N

N

L

A

L

L

D

E

G

G

H

K

P

K

V

L

P

P

L

L

Y

Y

G

G

D

D

G

G

G

L

N

N

Q

V

R

R

D

D

W

W

L

L

H

H

V

V

D

T

D

D

H

H

C

C

R

S

G

A

I

I

A

D

L

V

V

V

L

L

Q

H

K

K

G

G

T

R

S

V

G

G

E

E

V

V

Y

Y

N

N

I

I

G

G

G

N

T

N

E

E

L

K

T

T

N

N

K

V

E

E

L

V

T

V

H

E

M

Q

L

I

G

T

L

L

T

L

G

G

R

K

D

T

D

K

S

K

F

D

I

I

S

E

H

Y

V

V

E

-

D

-

R

-

L

T

G

G

H

H

D

D

R

R

Y

Y

C

A

V

I

S

N

I

A

D

E

K

K

I

M

S

K

R

N

E

E

L

F

G

D

Y

W

A

E

P

P

E

K

V

Y

D

T

F

F

Q

E

E

Q

G

G

L

L

A

Q

D

E

V

T

V

V

Q

Q

W

W

Y

Y

R

E

D

K

N

N

R

E

G

E

W

W

E

K

P

P

L

L

K

K

active site: T117 (= T127), D118 (= D128), E119 (= E129), Y142 (= Y151), K146 (= K155)
binding alpha-D-glucopyranose: Q62 (≠ R65), N63 (≠ D66)
binding nicotinamide-adenine-dinucleotide: G8 (= G7), G11 (= G10), F12 (= F11), I13 (= I12), D34 (= D37), A35 (= A38), L36 (= L39), T37 (= T40), S39 (= S42), G40 (= G43), E60 (≠ D63), F82 (= F83), A83 (= A84), A84 (= A85), T92 (= T102), S116 (= S126), T117 (= T127), Y142 (= Y151), K146 (= K155), C169 (= C178)

2hunA Crystal structure of hypothetical protein ph0414 from pyrococcus horikoshii ot3
47% identity, 98% coverage: 1:321/327 of query aligns to 2:316/329 of 2hunA

query
sites
2hunA

M

M

K

K

L

L

F

L

V

V

T

T

G
|
G

G

G

A

M

G
|
G

F
|
F

I
|
I

G

G

S

S

N

N

F

F

V

I

R

R

M

Y

A

I

L

L

G

E

G

K

R

H

L

-

P

-

G

-

L

-

E

P

E

D

A

W

E

E

I

V

T

I

V

N

F

I

D
|
D

A
x
K

L

L

T

G

Y

Y

S

G

G
x
S

T

N

L

P

T

A

N

N

L

L

E

K

S

D

V

L

A

E

N

D

H

D

P

P

R

R

F

Y

R

T

F

F

I

V

Q

K

G

G

D
|
D

I
x
V

R

A

D

D

M

Y

P

E

A

L

L

V

L

K

E

E

H

L

V

V

A

R

G

K

H

V

D

D

A

G

I

V

V

V

H

H

F
x
L

A
|
A

E

E

S

S

H

H

V

V

D

D

R

R

S

S

V

I

S

S

D

S

A

P

G

E

I

I

F

F

V

L

D

H

T
x
S

N

N

V

V

A

I

G

G

T

T

Q

Y

K

T

L

L

E

E

A

S

A

I

R

R

Q

R

L

E

G

N

T

P

D

E

-

V

R

R

F

F

L

V

Q

H

V

V

S

S

T
|
T

D
|
D

E
|
E

V

V

Y

Y

G

G

S

D

I

I

D

L

E

K

G

G

E

S

W

F

D

T

E

E

E

N

E

D

P

R

L

L

L

M

P

P

N

S

S

S

P

P

Y
|
Y

A

S

A

A

S

T

K
|
K

A

A

S

S

D

D

L

M

M

L

V

V

R

L

A

G

Y

W

H

T

Q

R

T

T

H

Y

G

N

L

L

D

N

T

A

V

S

M

I

T

T

R

R

C
|
C

S
x
T

N
|
N

Y

Y

G

G

P

P

H

Y

H

Q

F

F

P

P

E

E

K

K

V

L

I

I

P

P

L

K

F

T

V

I

T

I

N

R

L

A

L

S

D

L

G

G

H

L

P

K

V

I

P

P

L

I

Y

Y

G

G

D

-

G

-

N

T

Q

V

R

R

D

D

W

W

L

L

H

Y

V

V

D

E

D

D

H

H

C

V

R

R

G

A

I

I

A

E

L

L

V

V

L

L

Q

L

K

K

G

G

T

E

S

S

G

R

E

E

V

I

Y

Y

N

N

I

I

G

S

G

A

G

G

T

E

E

E

L

K

T

T

N

N

K

L

E

E

L

V

T

V

H

K

M

I

L

I

L

L

G

R

L

L

T

M

G

G

R

K

D

G

D

E

S

E

F

L

I

I

S

E

H

L

V

V

E

E

D

D

R

R

L

P

G

G

H

H

D

D

R

L

R

R

Y

Y

C

S

V

L

S

D

I

S

D

W

K

K

I

I

S

T

R

R

E

D

L

L

G

K

Y

W

A

R

P

P

E

K

V

Y

D

T

F

F

Q

D

E

E

G

G

L

I

A

K

D

K

V

T

V

I

Q

D

W

W

Y

Y

R

L

D

K

N

N

R

E

G

W

W

W

E

K

P

P

L

L

active site: T125 (= T127), D126 (= D128), E127 (= E129), Y149 (= Y151), K153 (= K155)
binding nicotinamide-adenine-dinucleotide: G8 (= G7), G11 (= G10), F12 (= F11), I13 (= I12), D34 (= D37), K35 (≠ A38), S40 (≠ G43), D60 (= D63), V61 (≠ I64), L80 (≠ F83), A81 (= A84), A82 (= A85), S99 (≠ T102), T125 (= T127), K153 (= K155), C176 (= C178), T177 (≠ S179), N178 (= N180), N179 (= N181)

8du1A Crystal structure of NAD bound dtdp-glucose 4,6-dehydratase from elizabethkingia anophelis
44% identity, 97% coverage: 3:319/327 of query aligns to 6:345/361 of 8du1A

query
sites
8du1A

L

I

F

I

V

I

T

T

G
|
G

G

G

A

A

G
|
G

F
|
F

I
|
I

G

G

S

S

N

H

F

V

V

V

R

R

M

E

A

F

L

V

G

-

R

-

L

-

P

-

G

-

L

I

E

K

E

N

A

P

E

E

I

I

T

T

V

I

-

I

-

N

F

L

D
|
D

A
|
A

L
|
L

T
|
T

Y

Y

S

A

G
|
G

T

N

L

L

T

E

N

N

L

L

E

K

S

D

V

I

A

E

N

N

H

F

P

P

R

N

F

Y

R

V

F

F

I

E

Q

K

G

A

D
|
D

I
|
I

R

T

D

K

M

P

P

E

A

E

L

L

L

R

E

K

H

V

V

F

A

E

G

K

H

Y

-

N

-

P

D

D

A

A

I

V

V

V

H

H

F
x
L

A
|
A

E

E

S

S

H

H

V

V

D

D

R

R

S

S

V

I

S

T

D

D

A

P

G

N

I

A

F

F

V

I

D

N

T
|
T

N

N

V

V

A

I

G

G

T

T

Q

A

K

N

L

L

E

N

A

L

A

C

R

R

Q

E

L

F

G

W

T

T

-

L

-

N

-

P

-

E

-

H

-

T

-

H

-

G

-

R

-

F

-

P

-

N

-

E

-

P

-

R

-

T

D

N

R

L

F

F

L

Y

Q

H

V

V

S
|
S

T
|
T

D

D

E

E

V

V

Y

Y

G

G

S

S

I

L

D

G

E

E

-

T

G

G

E

F

W

F

D

L

E

E

E

T

P

A

L

Y

L

D

P

P

N

Q

S

S

P

P

Y
|
Y

A

S

A

A

S

S

K
|
K

A

A

S

S

D

D

L

H

M

L

V

V

R

R

A

A

Y

Y

H

G

Q

N

T

T

H

Y

G

G

L

M

D

P

T

F

V

I

M

V

T

S

R

N

C
|
C

S

S

N

N

Y

Y

G

G

P

P

H

N

H

H

F

F

P

P

E

E

K

K

V

L

I

I

P

P

L

L

F

C

V

I

T

S

N

N

L

I

L

L

D

N

G

E

H

K

P

P

V

L

P

P

L

I

Y

Y

G

G

D

D

G

G

G

K

N

Y

Q

T

R

R

D

D

W

W

L

L

H

Y

V

V

D

I

D

D

H

H

C

A

R

R

G

A

I

I

A

H

L

Q

V

I

L

F

Q

N

K

E

G

A

T

K

S

T

G

G

E

E

V

T

Y

Y

N

N

I

I

G

G

G

F

T

N

E

E

L

W

T

Q

N

N

K

I

E

D

L

L

T

V

H

K

M

E

L

L

L

I

G

K

L

Q

-

L

-

D

-

A

-

K

-

L

-

G

-

K

-

P

T

E

G

G

R

H

D

S

D

E

S

K

F

L

I

I

S

T

H

F

V

V

E

K

D

D

R

R

L

P

G

G

H

H

D

D

R

K

R

R

Y

Y

C

A

V

I

S

D

I

A

D

T

K

K

I

L

S

N

R

K

E

D

L

L

G

G

Y

W

A

K

P

P

E

S

V

V

D

T

F

F

Q

E

E

E

G

G

L

L

A

A

D

K

V

T

V

I

Q

D

W

W

Y

Y

R

L

D

D

N

N

R

K

G

E

W

W

W

L

E

E

binding nicotinamide-adenine-dinucleotide: G10 (= G7), G13 (= G10), F14 (= F11), I15 (= I12), D36 (= D37), A37 (= A38), L38 (= L39), T39 (= T40), G42 (= G43), D62 (= D63), I63 (= I64), L84 (≠ F83), A85 (= A84), A86 (= A85), T103 (= T102), S143 (= S126), T144 (= T127), Y169 (= Y151), K173 (= K155), C196 (= C178)

1kewA The crystal structure of dtdp-d-glucose 4,6-dehydratase (rmlb) from salmonella enterica serovar typhimurium with thymidine diphosphate bound (see paper)
43% identity, 99% coverage: 1:325/327 of query aligns to 1:348/361 of 1kewA

query
sites
1kewA

M

M

K

K

L

I

F

L

V

I

T

T

G

G

A

A

G
|
G

F
|
F

I
|
I

G

G

S

S

N

A

F

V

V

V

R

R

M

H

A

I

L

I

G

K

G

N

R

T

L

-

P

-

G

-

L

-

E

-

E

Q

A

D

E

T

I

V

T

V

V

N

F

I

D
|
D

A
x
K

L
|
L

T
|
T

Y

Y

S
x
A

G
|
G

T

N

L

L

T

E

N

S

L

L

E

S

S

D

V

I

A

S

N

E

H

S

P

N

R

R

F

Y

R

N

F

F

I

E

Q

H

G

A

D
|
D

I
|
I

R

C

D

D

M

S

P

A

A

E

L

I

L

T

E

R

H

I

V

F

A

E

G

Q

H

Y

-

Q

-

P

D

D

A

A

I

V

V

M

H

H

F
x
L

A
|
A

E

E

S
|
S

H

H

V

V

D

D

R

R

S

S

V

I

S

T

D

G

A

P

G

A

I

A

F

F

V

I

D

E

T
|
T

N

N

V

I

A

V

G

G

T

T

Q

Y

K

A

L

L

E

E

A

V

A

A

R

R

Q

K

-

Y

-

W

-

S

-

A

L

L

G

G

T

E

D

D

-

K

-

N

-

F

R

R

F

F

L

H

Q

H

V
x
I

S
|
S

T
|
T

D
|
D

E
|
E

V

V

Y

Y

G

G

S

D

I

L

-

P

-

H

-

P

D

D

E

E

G

V

E

E

W

N

D

S

E

V

E

T

E
x
L

P

P

L
|
L

L
x
F

-

T

-

E

-
x
T

-

T

-

A

-

Y

-

A

P

P

N

S

S

S

P

P

Y
|
Y

A

S

A

A

S

S

K
|
K

A

A

A

S

S

S

D

D

L

H

M

L

V

V

R

R

A

A

Y

W

H

R

Q

R

T

T

H

Y

G

G

L

L

D

P

T

T

V

I

M

V

T

T

R

N

C
|
C

S

S

N
|
N

Y

Y

G

G

P

P

H

Y

H

H

F

F

P

P

E

E

K
|
K

V
x
L

I

I

P

P

L

L

F

V

V

I

T

L

N

N

L

A

L

L

D

E

G

G

H

K

P

P

V

L

P
|
P

L

I

Y
|
Y

G

G

D

K

G

G

G

D

N

Q

Q

I

R
|
R

D

D

W

W

L

L

H

Y

V

V

D

E

D

D

H

H

C

A

R

R

G

A

I

L

A

H

L

M

V

V

L

V

Q

T

K

E

G

G

T

K

S

A

G

G

E

E

V

T

Y

Y

N

N

I

I

G

G

G

H

T

N

E

E

L

K

T

K

N
|
N

K

L

E

D

L

V

T

V

H

F

M

T

L

I

L

C

G

D

L

L

-

L

-

D

-

E

-

I

T

V

G

P

R

K

D

A

D

T

S

S

F

Y

-

R

-

E

-

Q

I

I

S

T

H

Y

V

V

E

A

D

D

R
|
R

L

P

G

G

H
|
H

D

D

R

R

Y

Y

C

A

V

I

S

D

I

A

D

G

K

K

I

I

S

S

R

R

E

E

L

L

G

G

Y

W

A

K

P

P

E

L

V

E

D

T

F

F

Q

E

E

S

G

G

L

I

A

R

D

K

V

T

V

V

Q

E

W

W

Y

Y

R

L

D

A

N

N

R

T

G

Q

W

W

W

V

E

N

P

N

L

V

K

K

A

S

R

G

A

A

active site: T133 (= T127), D134 (= D128), E135 (= E129), L152 (≠ E143), L154 (= L145), F155 (≠ L146), T158 (vs. gap), Y167 (= Y151), K171 (= K155)
binding nicotinamide-adenine-dinucleotide: G10 (= G10), F11 (= F11), I12 (= I12), D32 (= D37), K33 (≠ A38), L34 (= L39), T35 (= T40), A37 (≠ S42), G38 (= G43), D58 (= D63), I59 (= I64), L80 (≠ F83), A81 (= A84), A82 (= A85), S84 (= S87), T99 (= T102), I131 (≠ V125), S132 (= S126), T133 (= T127), Y167 (= Y151), K171 (= K155), C194 (= C178), N196 (= N180), N197 (= N181)
binding thymidine-5'-diphosphate: E135 (= E129), N196 (= N180), K206 (= K190), L207 (≠ V191), P222 (= P206), Y224 (= Y208), R231 (= R215), N266 (= N250), R297 (= R274), H300 (= H277)

Sites not aligning to the query:

binding thymidine-5'-diphosphate: 357

1keuA The crystal structure of dtdp-d-glucose 4,6-dehydratase (rmlb) from salmonella enterica serovar typhimurium with dtdp-d-glucose bound (see paper)
43% identity, 99% coverage: 1:325/327 of query aligns to 1:348/361 of 1keuA

query
sites
1keuA

M

M

K

K

L

I

F

L

V

I

T

T

G

G

A

A

G
|
G

F
|
F

I
|
I

G

G

S

S

N

A

F

V

V

V

R

R

M

H

A

I

L

I

G

K

G

N

R

T

L

-

P

-

G

-

L

-

E

-

E

Q

A

D

E

T

I

V

T

V

V

N

F

I

D
|
D

A
x
K

L
|
L

T
|
T

Y

Y

S

A

G
|
G

T

N

L

L

T

E

N

S

L

L

E

S

S

D

V

I

A

S

N

E

H

S

P

N

R

R

F

Y

R

N

F

F

I

E

Q

H

G

A

D
|
D

I

I

R

C

D

D

M

S

P

A

A

E

L

I

L

T

E

R

H

I

V

F

A

E

G

Q

H

Y

-

Q

-

P

D

D

A

A

I

V

V

M

H

H

F
x
L

A
|
A

E

E

S
|
S

H

H

V

V

D

D

R

R

S

S

V

I

S

T

D

G

A

P

G

A

I

A

F

F

V

I

D

E

T
|
T

N

N

V

I

A

V

G

G

T

T

Q

Y

K

A

L

L

E

E

A

V

A

A

R

R

Q

K

-

Y

-

W

-

S

-

A

L

L

G

G

T

E

D

D

-

K

-

N

-

F

R

R

F

F

L

H

Q

H

V

I

S
|
S

T
|
T

D
|
D

E
|
E

V

V

Y

Y

G

G

S

D

I

L

-

P

-

H

-

P

D

D

E

E

G

V

E

E

W

N

D

S

E

V

E

T

E
x
L

P

P

L
|
L

L
x
F

-

T

-

E

-
x
T

-

T

-

A

-

Y

-

A

P

P

N

S

S

S

P

P

Y
|
Y

A

S

A

A

S

S

K
|
K

A

A

A

S

S

S

D

D

L

H

M

L

V

V

R

R

A

A

Y

W

H

R

Q

R

T

T

H

Y

G

G

L

L

D

P

T

T

V

I

M

V

T

T

R

N

C
|
C

S

S

N
|
N

Y

Y

G

G

P

P

H

Y

H

H

F

F

P

P

E

E

K
|
K

V
x
L

I

I

P

P

L

L

F

V

V

I

T

L

N

N

L

A

L

L

D

E

G

G

H

K

P

P

V

L

P
|
P

L

I

Y
|
Y

G

G

D

K

G

G

G

D

N

Q

Q

I

R
|
R

D

D

W

W

L

L

H

Y

V

V

D

E

D

D

H

H

C

A

R

R

G

A

I

L

A

H

L

M

V

V

L

V

Q

T

K

E

G

G

T

K

S

A

G

G

E

E

V

T

Y

Y

N

N

I

I

G

G

G

H

T

N

E

E

L

K

T

K

N
|
N

K

L

E

D

L

V

T

V

H

F

M

T

L

I

L

C

G

D

L

L

-

L

-

D

-

E

-

I

T

V

G

P

R

K

D

A

D

T

S

S

F

Y

-

R

-

E

-

Q

I

I

S

T

H

Y

V

V

E

A

D

D

R
|
R

L

P

G

G

H
|
H

D

D

R

R

Y

Y

C

A

V

I

S

D

I

A

D

G

K

K

I

I

S

S

R

R

E

E

L

L

G

G

Y

W

A

K

P

P

E

L

V

E

D

T

F

F

Q

E

E

S

G

G

L

I

A

R

D

K

V

T

V

V

Q

E

W

W

Y

Y

R

L

D

A

N

N

R

T

G

Q

W

W

W

V

E

N

P

N

L

V

K

K

A

S

R

G

A

A

active site: T133 (= T127), D134 (= D128), E135 (= E129), L152 (≠ E143), L154 (= L145), F155 (≠ L146), T158 (vs. gap), Y167 (= Y151), K171 (= K155)
binding 2'deoxy-thymidine-5'-diphospho-alpha-d-glucose: S84 (= S87), T133 (= T127), D134 (= D128), E135 (= E129), Y167 (= Y151), N196 (= N180), K206 (= K190), L207 (≠ V191), P222 (= P206), Y224 (= Y208), R231 (= R215), N266 (= N250), R297 (= R274), H300 (= H277)
binding nicotinamide-adenine-dinucleotide: G10 (= G10), F11 (= F11), I12 (= I12), D32 (= D37), K33 (≠ A38), L34 (= L39), T35 (= T40), G38 (= G43), D58 (= D63), L80 (≠ F83), A81 (= A84), A82 (= A85), S84 (= S87), T99 (= T102), S132 (= S126), T133 (= T127), Y167 (= Y151), K171 (= K155), C194 (= C178), N196 (= N180), N197 (= N181)

Sites not aligning to the query:

binding 2'deoxy-thymidine-5'-diphospho-alpha-d-glucose: 357

P26391 dTDP-glucose 4,6-dehydratase; EC 4.2.1.46 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 2 papers)
43% identity, 99% coverage: 1:325/327 of query aligns to 1:348/361 of P26391

query
sites
P26391

M

M

K

K

L

I

F

L

V

I

T

T

G

G

A

A

G

G

F
|
F

I
|
I

G

G

S

S

N

A

F

V

V

V

R

R

M

H

A

I

L

I

G

K

G

N

R

T

L

-

P

-

G

-

L

-

E

-

E

Q

A

D

E

T

I

V

T

V

V

N

F

I

D
|
D

A
x
K

L
|
L

T
|
T

Y

Y

S

A

G

G

T

N

L

L

T

E

N

S

L

L

E

S

S

D

V

I

A

S

N

E

H

S

P

N

R

R

F

Y

R

N

F

F

I

E

Q

H

G

A

D
|
D

I
|
I

R

C

D

D

M

S

P

A

A

E

L

I

L

T

E

R

H

I

V

F

A

E

G

Q

H

Y

-

Q

-

P

D

D

A

A

I

V

V

M

H

H

F
x
L

A
|
A

E
|
E

S
|
S

H

H

V

V

D

D

R

R

S

S

V

I

S

T

D

G

A

P

G

A

I

A

F

F

V

I

D

E

T
|
T

N

N

V

I

A

V

G

G

T

T

Q

Y

K

A

L

L

E

E

A

V

A

A

R

R

Q

K

-

Y

-

W

-

S

-

A

L

L

G

G

T

E

D

D

-

K

-

N

-

F

R

R

F

F

L

H

Q

H

V

I

S

S

T
|
T

D

D

E

E

V

V

Y

Y

G

G

S

D

I

L

-

P

-

H

-

P

D

D

E

E

G

V

E

E

W

N

D

S

E

V

E

T

E

L

P

P

L

L

L

F

-

T

-

E

-

T

-

A

-

Y

-

A

P

P

N

S

S

S

P

P

Y
|
Y

A
x
S

A
|
A

S
|
S

K
|
K

A

A

A

S

S

S

D

D

L

H

M

L

V

V

R

R

A

A

Y

W

H

R

Q

R

T

T

H

Y

G

G

L

L

D

P

T

T

V

I

M

V

T

T

R

N

C

C

S

S

N
|
N

Y

Y

G

G

P

P

H

Y

H

H

F

F

P

P

E

E

K
|
K

V
x
L

I

I

P

P

L

L

F

V

V

I

T

L

N

N

L

A

L

L

D

E

G

G

H

K

P

P

V

L

P
|
P

L
x
I

Y
|
Y

G

G

D

K

G

G

G

D

N

Q

Q

I

R
|
R

D

D

W

W

L

L

H

Y

V

V

D

E

D

D

H

H

C

A

R

R

G

A

I

L

A

H

L

M

V

V

L

V

Q

T

K

E

G

G

T

K

S

A

G

G

E

E

V

T

Y

Y

N

N

I

I

G

G

G

H

T

N

E

E

L

K

T

K

N
|
N

K

L

E

D

L

V

T

V

H

F

M

T

L

I

L

C

G

D

L

L

-

L

-

D

-

E

-

I

T

V

G

P

R

K

D

A

D

T

S

S

F

Y

-

R

-

E

-

Q

I

I

S

T

H

Y

V

V

E

A

D
|
D

R
|
R

L
x
P

G
|
G

H
|
H

D

D

R

R

Y

Y

C

A

V

I

S

D

I

A

D

G

K

K

I

I

S

S

R

R

E

E

L

L

G

G

Y

W

A

K

P

P

E

L

V

E

D

T

F

F

Q

E

E

S

G

G

L

I

A

R

D

K

V

T

V

V

Q

E

W

W

Y

Y

R

L

D

A

N

N

R

T

G

Q

W

W

W

V

E

N

P

N

L

V

K

K

A

S

R

G

A

A

FI 11:12 (= FI 11:12) binding NAD(+)
DKLT 32:35 (≠ DALT 37:40) binding NAD(+)
DI 58:59 (= DI 63:64) binding NAD(+)
LAAES 80:84 (≠ FAAES 83:87) binding NAD(+)
S84 (= S87) binding substrate
T99 (= T102) binding NAD(+)
T133 (= T127) binding substrate
YSASK 167:171 (≠ YAASK 151:155) binding NAD(+)
N196 (= N180) binding substrate
N197 (= N181) binding NAD(+)
KL 206:207 (≠ KV 190:191) binding substrate
PIY 222:224 (≠ PLY 206:208) binding substrate
R231 (= R215) binding substrate
N266 (= N250) binding substrate
DRPGH 296:300 (≠ DRLGH 273:277) binding substrate

Sites not aligning to the query:

357 binding substrate

P27830 dTDP-glucose 4,6-dehydratase 2; EC 4.2.1.46 from Escherichia coli (strain K12) (see 2 papers)
43% identity, 98% coverage: 2:322/327 of query aligns to 3:342/355 of P27830

query
sites
P27830

K

K

L

I

F

L

V

I

T

T

G

G

A

A

G

G

F
|
F

I
|
I

G

G

S

S

N

A

F

L

V

V

R

R

M

Y

A

I

L

I

G

N

G

E

R

-

L

-

P

-

G

-

L

-

E

T

E

S

A

D

E

A

I

V

T

V

V

V

F

V

D
|
D

A
x
K

L
|
L

T
|
T

Y

Y

S

A

G

G

T

N

L

L

T

M

N

S

L

L

E

A

S

P

V

V

A

A

N

Q

H

S

P

E

R

R

F

F

R

A

F

F

I

E

Q

K

G

V

D
|
D

I
|
I

R

C

D

D

M

R

P

A

A

E

L

L

L

A

E

R

H

V

V

F

A

T

G

E

H

H

-

Q

-

P

D

D

A

C

I

V

V

M

H

H

F

L

A

A

E

E

S

S

H

H

V

V

D

D

R

R

S

S

V

I

S

D

D

G

A

P

G

A

I

A

F

F

V

I

D

E

T
|
T

N

N

V

I

A

V

G

G

T

T

Q

Y

K

T

L

L

E

E

A

A

R

R

-

A

-

Y

-

W

-

N

-

A

-

L

-

T

-

E

-

D

Q

K

L

K

G

S

T

A

D

F

R

R

F

F

L

H

Q

H

V

I

S

S

T

T

D
|
D

E
|
E

V

V

Y

Y

G

G

S

D

I

L

D

H

E

S

G

T

E

D

-

D

-

F

W

F

D

T

E

E

E

T

P

P

L

Y

L

A

P

P

N

S

S

S

P

P

Y
|
Y

A
x
S

A
|
A

S
|
S

K
|
K

A

A

A

S

S

S

D

D

L

H

M

L

V

V

R

R

A

A

Y

W

H

L

Q

R

T

T

H

Y

G

G

L

L

D

P

T

T

V

L

M

I

T

T

R

N

C

C

S

S

N

N

N
|
N

Y

Y

G

G

P

P

H

Y

H

H

F

F

P

P

E

E

K

K

V

L

I

I

P

P

L

L

F

M

V

I

T

L

N

N

L

A

L

L

D

A

G

G

H

K

P

S

V

L

P

P

L

V

Y

Y

G

G

D

N

G

G

G

Q

N

Q

Q

I

R

R

D

D

W

W

L

L

H

Y

V

V

D

E

D

D

H

H

C

A

R

R

G

A

I

L

A

Y

L

C

V

V

L

A

Q

T

K

T

G

G

T

K

S

V

G

G

E

E

V

T

Y

Y

N

N

I

I

G

G

G

H

T

N

E

E

L

R

T

K

N

N

K

L

E

D

L

V

T

V

H

E

M

T

L

I

L

C

G

E

L

L

-

L

-

E

-

L

-

A

-

P

-

N

-

K

-

P

-

H

-

G

T

V

G

A

R

H

D

Y

D

R

S

D

F

L

I

I

S

T

H

F

V

V

E

A

D

D

R

R

L

P

G

G

H

H

D

D

R

L

R

R

Y

Y

C

A

V

I

S

D

I

A

D

S

K

K

I

I

S

A

R

R

E

E

L

L

G

G

Y

W

A

L

P

P

E

Q

V

E

D

T

F

F

Q

E

E

S

G

G

L

M

A

R

D

K

V

T

V

V

Q

Q

W

W

Y

Y

R

L

D

A

N

N

R

E

G

S

W

W

E

K

P

Q

L

V

K

Q

FI 12:13 (= FI 11:12) binding NAD(+)
DKLT 33:36 (≠ DALT 37:40) binding NAD(+)
DI 59:60 (= DI 63:64) binding NAD(+)
T100 (= T102) binding NAD(+)
D135 (= D128) active site, Proton donor
E136 (= E129) active site, Proton acceptor
Y160 (= Y151) active site, Proton acceptor
YSASK 160:164 (≠ YAASK 151:155) binding NAD(+)
N190 (= N181) binding NAD(+)

1kerB The crystal structure of dtdp-d-glucose 4,6-dehydratase (rmlb) from streptococcus suis with dtdp-d-glucose bound (see paper)
44% identity, 98% coverage: 3:322/327 of query aligns to 6:332/347 of 1kerB

query
sites
1kerB

L

I

F

I

V

V

T

T

G

G

A

A

G
|
G

F
|
F

I
|
I

G

G

S

S

N

N

F

F

V

V

R

H

M

Y

A

V

L

Y

G

N

R

H

L

-

P

-

G

-

L

-

E

P

E

D

A

V

E

H

I

V

T

T

V

V

F

L

D
|
D

A
x
K

L
|
L

T
|
T

Y

Y

S

A

G
|
G

T

N

L

K

T

A

N

N

L

L

E

E

S

A

V

I

A

L

N

G

H

-

P

D

R

R

F

V

R

E

F

L

I

V

Q

V

G

G

D
|
D

I
|
I

R

A

D

D

M

A

P

E

A

L

L

V

L

D

E

K

H

L

V

A

A

A

G

K

H

A

D

D

A

A

I

I

V

V

H

H

F
x
Y

A
|
A

E

E

S
|
S

H

H

V
x
N

D

D

R

N

S

S

V

L

S

N

D

D

A

P

G

S

I

P

F

F

V

I

D

H

T
|
T

N

N

V

F

A

I

G

G

T

T

Q

Y

K

T

L

L

E

E

A

A

R

R

Q

K

L

Y

G

D

T

I

D

-

R

R

F

F

L

H

Q

H

V

V

S
|
S

T
|
T

D
|
D

E
|
E

V

V

Y

Y

G

G

S

D

I

L

D

P

-

L

-

R

-

E

-

D

-

L

-

P

-

G

-

H

-

G

E

E

G

G

-

P

-

G

-

E

E

K

W

F

D

T

E

A

E

E

E

T

P

N

L

Y

L

N

P

P

N

S

S

S

P

P

Y
|
Y

A

S

S

T

K
|
K

A

A

S

S

D

D

L

L

M

I

V

V

R

K

A

A

Y

W

H

V

Q

R

T

S

H

F

G

G

L

V

D

K

T

A

V

T

M

I

T

S

R

N

C
|
C

S

S

N
|
N

Y

Y

G

G

P

P

H

Y

H

Q

F

H

P

I

E

E

K
|
K

V
x
F

I

I

P

P

L
x
R

F
x
Q

V

I

T

T

N

N

L

I

L

L

D

A

G

G

H

I

P

K

V

P

P
x
K

L
|
L

Y
|
Y

G

G

D

E

G

G

G

K

N

N

Q

V

R
|
R

D

D

W

W

L

I

H

H

V

T

D

N

D

D

H

H

C

S

R

T

G

G

I

V

A

W

L

A

V

I

L

L

Q

T

K

K

G

G

T

R

S

M

G

G

E

E

V

T

Y

Y

N

L

I

I

G

G

G

A

G

D

T

G

E

E

L

K

T

N

N
|
N

K

K

E

E

L

V

T

L

H

E

M

L

L

I

L

L

G

E

L

K

T

M

G

G

R

Q

D

P

D

K

S

D

F

A

I

Y

S

D

H

H

V

V

E

T

D

D

R
|
R

L

A

G

G

H
|
H

D

D

R

L

R

R

Y

Y

C

A

V

I

S

D

I

A

D

S

K

K

I

L

S

R

R

D

E

E

L

L

G

G

Y

W

A

T

P

P

E

Q

-

F

V

T

D

D

F

F

Q

S

E

E

G

G

L

L

A

E

D

E

V

T

V

I

Q

Q

W

W

Y

Y

R

T

D

D

N

N

R

Q

G

D

W

W

E

K

P

A

L

E

K

K

active site: T124 (= T127), D125 (= D128), E126 (= E129), Y160 (= Y151), K164 (= K155)
binding 2'deoxy-thymidine-5'-diphospho-alpha-d-glucose: S85 (= S87), N87 (≠ V89), T124 (= T127), D125 (= D128), E126 (= E129), Y160 (= Y151), N189 (= N180), K199 (= K190), F200 (≠ V191), R203 (≠ L194), Q204 (≠ F195), K215 (≠ P206), L216 (= L207), Y217 (= Y208), R224 (= R215), N259 (= N250), R283 (= R274), H286 (= H277)
binding nicotinamide-adenine-dinucleotide: G13 (= G10), F14 (= F11), I15 (= I12), D36 (= D37), K37 (≠ A38), L38 (= L39), T39 (= T40), G42 (= G43), D61 (= D63), I62 (= I64), Y81 (≠ F83), A82 (= A84), A83 (= A85), S85 (= S87), T100 (= T102), S123 (= S126), T124 (= T127), Y160 (= Y151), K164 (= K155), C187 (= C178), N190 (= N181)

1ketA The crystal structure of dtdp-d-glucose 4,6-dehydratase (rmlb) from streptococcus suis with thymidine diphosphate bound (see paper)
44% identity, 98% coverage: 3:322/327 of query aligns to 5:331/346 of 1ketA

query
sites
1ketA

L

I

F

I

V

V

T

T

G

G

A

A

G
|
G

F
|
F

I
|
I

G

G

S

S

N

N

F

F

V

V

R

H

M

Y

A

V

L

Y

G

N

R

H

L

-

P

-

G

-

L

-

E

P

E

D

A

V

E

H

I

V

T

T

V

V

F

L

D
|
D

A
x
K

L
|
L

T
|
T

Y

Y

S
x
A

G
|
G

T

N

L

K

T

A

N

N

L

L

E

E

S

A

V

I

A

L

N

G

H

-

P

D

R

R

F

V

R

E

F

L

I

V

Q

V

G

G

D
|
D

I
|
I

R

A

D

D

M

A

P

E

A

L

L

V

L

D

E

K

H

L

V

A

A

A

G

K

H

A

D

D

A

A

I

I

V

V

H

H

F
x
Y

A

A

A
|
A

E

E

S
|
S

H

H

V

N

D

D

R

N

S

S

V

L

S

N

D

D

A

P

G

S

I

P

F

F

V

I

D

H

T
|
T

N

N

V

F

A

I

G

G

T

T

Q

Y

K

T

L

L

E

E

A

A

R

R

Q

K

L

Y

G

D

T

I

D

-

R

R

F

F

L

H

Q

H

V

V

S
|
S

T
|
T

D
|
D

E
|
E

V

V

Y

Y

G

G

S

D

I

L

D

P

-

L

-

R

-

E

-

D

-

L

-

P

-

G

-

H

-

G

E

E

G

G

-

P

-

G

-

E

E

K

W

F

D

T

E

A

E

E

E

T

P

N

L

Y

L

N

P

P

N

S

S

S

P

P

Y
|
Y

A

S

S

T

K
|
K

A

A

S

S

D

D

L

L

M

I

V

V

R

K

A

A

Y

W

H

V

Q

R

T

S

H

F

G

G

L

V

D

K

T

A

V

T

M

I

T

S

R

N

C

C

S

S

N
|
N

N

N

Y

Y

G

G

P

P

H

Y

H

Q

F

H

P

I

E

E

K

K

V
x
F

I

I

P

P

L
x
R

F
x
Q

V

I

T

T

N

N

L

I

L

L

D

A

G

G

H

I

P

K

V

P

P
x
K

L

L

Y
|
Y

G

G

D

E

G

G

G

K

N

N

Q

V

R
|
R

D

D

W

W

L

I

H

H

V

T

D

N

D

D

H

H

C

S

R

T

G

G

I

V

A

W

L

A

V

I

L

L

Q

T

K

K

G

G

T

R

S

M

G

G

E

E

V

T

Y

Y

N

L

I

I

G

G

G

A

G

D

T

G

E

E

L

K

T

N

N
|
N

K

K

E

E

L

V

T

L

H

E

M

L

L

I

L

L

G

E

L

K

T

M

G

G

R

Q

D

P

D

K

S

D

F

A

I

Y

S

D

H

H

V

V

E

T

D

D

R
|
R

L

A

G

G

H
|
H

D

D

R

L

R

R

Y

Y

C

A

V

I

S

D

I

A

D

S

K

K

I

L

S

R

R

D

E

E

L

L

G

G

Y

W

A

T

P

P

E

Q

-

F

V

T

D

D

F

F

Q

S

E

E

G

G

L

L

A

E

D

E

V

T

V

I

Q

Q

W

W

Y

Y

R

T

D

D

N

N

R

Q

G

D

W

W

E

K

P

A

L

E

K

K

active site: T123 (= T127), D124 (= D128), E125 (= E129), Y159 (= Y151), K163 (= K155)
binding nicotinamide-adenine-dinucleotide: G12 (= G10), F13 (= F11), I14 (= I12), D35 (= D37), K36 (≠ A38), L37 (= L39), T38 (= T40), A40 (≠ S42), G41 (= G43), D60 (= D63), I61 (= I64), Y80 (≠ F83), A82 (= A85), S84 (= S87), T99 (= T102), S122 (= S126), T123 (= T127), Y159 (= Y151), K163 (= K155)
binding thymidine-5'-diphosphate: E125 (= E129), N188 (= N180), F199 (≠ V191), R202 (≠ L194), Q203 (≠ F195), K214 (≠ P206), Y216 (= Y208), R223 (= R215), N258 (= N250), R282 (= R274), H285 (= H277)

1kepA The crystal structure of dtdp-d-glucose 4,6-dehydratase (rmlb) from streptococcus suis with dtdp-xylose bound (see paper)
44% identity, 98% coverage: 3:322/327 of query aligns to 5:331/346 of 1kepA

query
sites
1kepA

L

I

F

I

V

V

T

T

G

G

A

A

G
|
G

F
|
F

I
|
I

G

G

S

S

N

N

F

F

V

V

R

H

M

Y

A

V

L

Y

G

N

R

H

L

-

P

-

G

-

L

-

E

P

E

D

A

V

E

H

I

V

T

T

V

V

F

L

D
|
D

A
x
K

L
|
L

T
|
T

Y

Y

S

A

G
|
G

T

N

L

K

T

A

N

N

L

L

E

E

S

A

V

I

A

L

N

G

H

-

P

D

R

R

F

V

R

E

F

L

I

V

Q

V

G

G

D
|
D

I
|
I

R

A

D

D

M

A

P

E

A

L

L

V

L

D

E

K

H

L

V

A

A

A

G

K

H

A

D

D

A

A

I

I

V

V

H

H

F
x
Y

A
|
A

E

E

S
|
S

H

H

V

N

D

D

R

N

S

S

V

L

S

N

D

D

A

P

G

S

I

P

F

F

V

I

D

H

T
|
T

N

N

V

F

A

I

G

G

T

T

Q

Y

K

T

L

L

E

E

A

A

R

R

Q

K

L

Y

G

D

T

I

D

-

R

R

F

F

L

H

Q

H

V

V

S
|
S

T
|
T

D
|
D

E
|
E

V

V

Y

Y

G

G

S

D

I

L

D

P

-

L

-

R

-

E

-

D

-

L

-

P

-

G

-

H

-

G

E

E

G

G

-

P

-

G

-

E

E

K

W

F

D

T

E

A

E

E

E

T

P

N

L

Y

L

N

P

P

N

S

S

S

P

P

Y
|
Y

A

S

S

T

K
|
K

A

A

S

S

D

D

L

L

M

I

V

V

R

K

A

A

Y

W

H

V

Q

R

T

S

H

F

G

G

L

V

D

K

T

A

V

T

M

I

T

S

R

N

C

C

S

S

N
|
N

Y

Y

G

G

P

P

H

Y

H

Q

F

H

P

I

E

E

K
|
K

V

F

I

I

P

P

L

R

F

Q

V

I

T

T

N

N

L

I

L

L

D

A

G

G

H

I

P

K

V

P

P

K

L

L

Y

Y

G

G

D

E

G

G

G

K

N

N

Q

V

R
|
R

D

D

W

W

L

I

H

H

V

T

D

N

D

D

H

H

C

S

R

T

G

G

I

V

A

W

L

A

V

I

L

L

Q

T

K

K

G

G

T

R

S

M

G

G

E

E

V

T

Y

Y

N

L

I

I

G

G

G

A

G

D

T

G

E

E

L

K

T

N

N

N

K

K

E

E

L

V

T

L

H

E

M

L

L

I

L

L

G

E

L

K

T

M

G

G

R

Q

D

P

D

K

S

D

F

A

I

Y

S

D

H

H

V

V

E

T

D

D

R
|
R

L

A

G

G

H

H

D

D

R

L

R

R

Y

Y

C

A

V

I

S

D

I

A

D

S

K

K

I

L

S

R

R

D

E

E

L

L

G

G

Y

W

A

T

P

P

E

Q

-

F

V

T

D

D

F

F

Q

S

E

E

G

G

L

L

A

E

D

E

V

T

V

I

Q

Q

W

W

Y

Y

R

T

D

D

N

N

R

Q

G

D

W

W

E

K

P

A

L

E

K

K

active site: T123 (= T127), D124 (= D128), E125 (= E129), Y159 (= Y151), K163 (= K155)
binding nicotinamide-adenine-dinucleotide: G12 (= G10), F13 (= F11), I14 (= I12), D35 (= D37), K36 (≠ A38), L37 (= L39), T38 (= T40), G41 (= G43), D60 (= D63), I61 (= I64), Y80 (≠ F83), A81 (= A84), A82 (= A85), S84 (= S87), T99 (= T102), S122 (= S126), Y159 (= Y151), K163 (= K155), N189 (= N181)
binding thymidine-5'-diphospho-beta-d-xylose: S84 (= S87), T123 (= T127), E125 (= E129), Y159 (= Y151), N188 (= N180), K198 (= K190), R223 (= R215), R282 (= R274)

1bxkB Dtdp-glucose 4,6-dehydratase from e. Coli
42% identity, 98% coverage: 2:322/327 of query aligns to 3:336/344 of 1bxkB

query
sites
1bxkB

K

K

L

I

F

L

V

I

T

T

G
|
G

G

G

A

A

G
|
G

F
|
F

I
|
I

G

G

S

S

N

A

F

L

V

V

R

R

M

Y

A

I

L

I

G

N

G

E

R

-

L

-

P

-

G

-

L

-

E

T

E

S

A

D

E

A

I

V

T

V

V

V

F

V

D
|
D

A
x
K

L
|
L

T
|
T

Y

Y

S
x
A

G
|
G

T

N

L

L

T

M

N

S

L

L

E

A

S

P

V

V

A

A

N

Q

H

S

P

E

R

R

F

F

R

A

F

F

I

E

Q

K

G

V

D
|
D

I
|
I

R

C

D

D

M

R

P

A

A

E

L

L

L

A

E

R

H

V

V

F

A

T

G

E

H

H

-

Q

-

P

D

D

A

C

I

V

V

M

H

H

F
x
L

A

A

A
|
A

E

E

S

S

H

H

V

V

D

D

R

R

S

S

V

I

S

D

D

G

A

P

G

A

I

A

F

F

V

I

D

E

T
|
T

N

N

V

I

A

V

G

G

T

T

Q

Y

K

T

L

L

E

E

A

A

R

R

-

A

-

Y

-

W

-

N

-

A

-

L

-

T

-

E

-

D

Q

K

L

K

G
x
S

T

A

D

F

R

R

F

F

L

H

Q

H

V
x
I

S
|
S

T
|
T

D
|
D

E
|
E

V

V

Y

Y

G

G

S

D

I

L

D

H

E

S

G

T

E

D

-

D

-

F

W

F

D

T

E

E

E

T

P

P

L

Y

L

A

P

P

N

S

S
|
S

P

P

Y
|
Y

A
x
S

A

A

S

S

K
|
K

A

A

A

S

S

S

D

D

L

H

M

L

V

V

R

R

A

A

Y

W

H

L

Q

R

T

T

H

Y

G

G

L

L

D

P

T

T

V

L

M

I

T

T

R

N

C
|
C

S

S

N

N

Y

Y

G

G

P

P

H

Y

H

H

F

F

P

P

E

E

K

K

V

L

I

I

P

P

L

L

F

M

V

I

T

L

N

N

L

A

L

L

D

A

G

G

H

K

P

S

V

L

P

P

L

V

Y

Y

G

G

D

N

G

G

G

Q

N

Q

Q

I

R

R

D

D

W

W

L

L

H

Y

V

V

D

E

D

D

H

H

C

A

R

R

G

A

I

L

A

Y

L

C

V

V

L

A

Q

T

K

T

G

G

T

K

S

V

G

G

E

E

V

T

Y

Y

N

N

I

I

G

G

G

H

T

N

E

E

L

R

T

K

N

N

-

L

-

D

-

V

K

E

E

T

L

I

T

C

H

E

M

L

L

L

L

E

G

E

L

L

T

A

G

P

R

N

D

K

D

P

S

H

F

G

I

V

S

A

H

H

V

Y

E

R

D

D

R

L

L

I

G

T

H

F

-

V

D

A

R

L

R

R

Y

Y

C

A

V

I

S

D

I

A

D

S

K

K

I

I

S

A

R

R

E

E

L

L

G

G

Y

C

A

V

P

P

E

Q

V

E

D

T

F

F

Q

E

E

S

G

G

L

M

A

R

D

K

V

T

V

V

Q

Q

W

W

Y

Y

R

L

D

A

N

N

R

E

G

S

W

W

E

K

P

Q

L

V

K

Q

active site: S125 (≠ G118), T134 (= T127), D135 (= D128), E136 (= E129), S158 (= S149), Y160 (= Y151), S161 (≠ A152), K164 (= K155)
binding nicotinamide-adenine-dinucleotide: G8 (= G7), G11 (= G10), F12 (= F11), I13 (= I12), D33 (= D37), K34 (≠ A38), L35 (= L39), T36 (= T40), A38 (≠ S42), G39 (= G43), D59 (= D63), I60 (= I64), L81 (≠ F83), A83 (= A85), T100 (= T102), I132 (≠ V125), S133 (= S126), T134 (= T127), K164 (= K155), C187 (= C178)

P95780 dTDP-glucose 4,6-dehydratase; EC 4.2.1.46 from Streptococcus mutans serotype c (strain ATCC 700610 / UA159) (see paper)
43% identity, 98% coverage: 3:322/327 of query aligns to 7:333/348 of P95780

query
sites
P95780

L

I

F

I

V

V

T

T

G

G

A

A

G

G

F
|
F

I
|
I

G

G

S

S

N

N

F

F

V

V

R

H

M

Y

A

V

L

Y

G

N

R

H

L

-

P

-

G

-

L

-

E

P

E

D

A

V

E

H

I

V

T

T

V

V

F

L

D
|
D

A
x
K

L
|
L

T
|
T

Y

Y

S

A

G

G

T

N

L

R

T

A

N

N

L

L

E

E

S

E

V

I

A

L

N

G

H

-

P

D

R

R

F

V

R

E

F

L

I

V

Q

V

G

G

D
|
D

I
|
I

R

A

D

D

M

S

P

E

A

L

L

V

L

D

E

K

H

L

V

A

A

A

G

K

H

A

D

D

A

A

I

I

V

V

H

H

F
x
Y

A
|
A

E
|
E

S
|
S

H

H

V
x
N

D

D

R

N

S

S

V

L

S

K

D

D

A

P

G

S

I

P

F

F

V

I

D

Y

T
|
T

N

N

V

F

A

V

G

G

T

T

Q

Y

K

I

L

L

E

E

A

A

R

R

Q

K

L

Y

G

D

T

I

D

-

R

R

F

F

L

H

Q

H

V

V

S

S

T
|
T

D

D

E

E

V

V

Y

Y

G

G

S

D

I

L

D

P

-

L

-

R

-

E

-

D

-

L

-

P

-

G

-

H

-

G

E

E

G

G

-

P

-

G

-

E

E

K

W

F

D

T

E

A

E

E

E

T

P

K

L

Y

L

N

P

P

N

S

S

S

P

P

Y

Y

A

S

S

T

K

K

A

A

S

S

D

D

L

L

M

I

V

V

R

K

A

A

Y

W

H

V

Q

R

T

S

H

F

G

G

L

V

D

K

T

A

V

T

M

I

T

S

R

N

C

C

S

S

N
|
N

Y

Y

G

G

P

P

H

Y

H

Q

F

H

P

I

E

E

K
|
K

V
x
F

I
|
I

P
|
P

L
x
R

F
x
Q

V

I

T

T

N

N

L

I

L

L

D

S

G

G

H

I

P

K

V

P

P
x
K

L
|
L

Y
|
Y

G

G

D

E

G

G

G

K

N

N

Q

V

R
|
R

D

D

W

W

L

I

H

H

V

T

D

N

D

D

H

H

C

S

R

T

G

G

I

V

A

W

L

A

V

I

L

L

Q

T

K

K

G

G

T

R

S

I

G

G

E

E

V

T

Y

Y

N

L

I

I

G

G

G

A

G

D

T

G

E

E

L

K

T

N

N
|
N

K

K

E

E

L

V

T

L

H

E

M

L

L

I

L

L

G

E

L

K

T

M

G

S

R

Q

D

P

D

K

S

N

F

A

I

Y

S

D

H

H

V

V

E

T

D

D

R

R

L

A

G

G

H

H

D

D

R

L

R

R

Y

Y

C

A

V

I

S

D

I

S

D

T

K

K

I

L

S

R

R

E

E

E

L

L

G

G

Y

W

A

K

P

P

E

Q

-

F

V

T

D

N

F

F

Q

E

E

E

G

G

L

L

A

E

D

D

V

T

V

I

Q

K

W

W

Y

Y

R

T

D

E

N

H

R

E

G

D

W

W

E

K

P

A

L

E

K

K

FI 15:16 (= FI 11:12) binding NAD(+)
DKLT 37:40 (≠ DALT 37:40) binding NAD(+)
DI 62:63 (= DI 63:64) binding NAD(+)
YAAES 82:86 (≠ FAAES 83:87) binding NAD(+)
N88 (≠ V89) binding substrate
T101 (= T102) binding NAD(+)
T125 (= T127) binding substrate
N190 (= N180) binding substrate
N191 (= N181) binding NAD(+)
KFIPRQ 200:205 (≠ KVIPLF 190:195) binding substrate
KLY 216:218 (≠ PLY 206:208) binding substrate
R225 (= R215) binding substrate
N260 (= N250) binding substrate

Q9LPG6 Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM2; NDP-rhamnose synthase; Protein MUCILAGE-MODIFIED 4; Protein RHAMNOSE BIOSYNTHESIS 2; Rhamnose biosynthetic enzyme 2; AtRHM2; UDP-L-rhamnose synthase MUM4; EC 4.2.1.76; EC 1.1.1.-; EC 5.1.3.- from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
38% identity, 97% coverage: 3:318/327 of query aligns to 11:328/667 of Q9LPG6

query
sites
Q9LPG6

L

I

F

L

V

I

T

T

G

G

G

A

A

A

G
|
G

F

F

I

I

G

A

S

S

N

H

F

-

V

-

R

-

M

-

A

-

L

V

G

A

G

N

R

R

L

L

-

I

P

R

G

N

L

Y

E

P

E

D

A

Y

E
x
K

I

I

T

V

V

V

F

L

D

D

A

K

L

L

T

D

Y

Y

S

C

G

S

T

D

L

L

T

K

N

N

L

L

E

D

S

P

V

S

A

F

N

S

H

S

P

P

R

N

F

F

R

K

F

F

I

V

Q

K

G

G

D

D

I

I

R

A

-

S

-

D

D

D

M

L

P

V

A

N

L

Y

L

L

E

L

H

I

V

T

A

E

G

N

H

I

D

D

A

T

I

I

V

M

H

H

F

F

A

A

E

Q

S

T

H

H

V

V

D
|
D

R

N

S

S

V

F

S

G

D

N

A

S

G

F

I

E

F

F

V

T

D

K

T

N

N

N

V

I

A

Y

G

G

T

T

Q

H

K

V

L

L

E

E

A

A

A

C

R

K

Q

V

L

T

G

G

-

Q

T

I

D

R

R

R

F

F

L

I

Q

H

V

V

S

S

T

T

D

D

E

E

V

V

Y

Y

G

G

S

E

I

T

D

D

E

E

G

D

E

A

W

A

-

V

-

G

-

N

D

H

E

E

E

A

E

S

P

Q

L

L

P

P

N

T

S

N

P

P

Y

Y

A

S

A

A

S

T

K
|
K

A

A

A

G

S

A

D

E

L

M

M

L

V

V

R

M

A

A

Y

Y

H

G

Q

R

T

S

H

Y

G

G

L

L

D

P

T

V

V

I

M

T

T

T

R

R

C

G

S

N

N

N

N

V

Y

Y

G
|
G

P

P

H

N

H

Q

F

F

P

P

E

E

K

K

V

M

I

I

P

P

L

K

F

F

V

I

T

L

N

L

L

A

L

M

D

S

G

G

H

K

P

P

V

L

P

P

L

I

Y

H

G

G

D

D

G

G

G

S

N

N

Q

V

R

R

D

S

W

Y

L

L

H

Y

V

C

D

E

D

D

H

V

C

A

R

E

G

A

I

F

A

E

L

V

V

V

L

L

Q

H

K

K

G

G

T

E

S

I

G

G

E

H

V

V

Y

Y

N

N

I

V

G

G

G

T

G

K

T

R

E

E

L

R

T

R

N

V

K

I

E

D

L

V

T

A

H

R

M

D

L

I

L

C

G

K

L

L

T

F

G

G

R

K

D

D

-

P

D

E

S

S

F

S

I

I

S

Q

H

F

V

V

E

E

D

N

R

R

L

P

G

F

H

N

D

D

R

Q

R

R

Y

Y

C

F

V

L

S

D

I

D

D

Q

K

K

I

L

S

-

R

K

E

K

L

L

G

G

Y

W

A

Q

P

E

E

R

V

T

D

N

F

W

Q

E

E

D

G

G

L

L

A

K

D

K

V

T

V

M

Q

D

W

W

Y

Y

R

T

D

Q

N

N

R

P

G

E

W

W

G18 (= G10) mutation to A: Abolishes dehydratase activity.
K36 (≠ E32) mutation to A: Reduces dehydratase activity.
D96 (= D90) mutation to N: In mum4-1; no extruded mucilage and seed coat defects. Abolishes dehydratase activity.
K165 (= K155) mutation to A: Abolishes dehydratase activity.
G193 (= G183) mutation to R: In mum4-2; no extruded mucilage and seed coat defects. Abolishes dehydratase activity.

Sites not aligning to the query:

392 G→A: No effect on dehydratase activity.
413 K→A: No effect on dehydratase activity.
518 K→A: No effect on dehydratase activity.

Q9SYM5 Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1; Protein REPRESSOR OF LRX1 1; Rhamnose biosynthetic enzyme 1; AtRHM1; EC 4.2.1.76; EC 1.1.1.-; EC 5.1.3.- from Arabidopsis thaliana (Mouse-ear cress) (see 3 papers)
37% identity, 97% coverage: 3:318/327 of query aligns to 9:326/669 of Q9SYM5

query
sites
Q9SYM5

L

I

F

L

V

I

T

T

G

G

G

A

A

A

G

G

F

F

I

I

G

A

S

S

N

H

F

V

V

A

R

N

M

R

A

L

L

I

G

R

G

S

R

-

L

-

P

-

G

-

L

Y

E

P

E

D

A

Y

E

K

I

I

T

V

V

V

F

L

D

D

A

K

L

L

T

D

Y

Y

S

C

G

S

T

N

L

L

T

K

N

N

L

L

E

N

S

P

V

S

A

K

N

H

H

S

P

P

R

N

F

F

R

K

F

F

I

V

Q

K

G

G

D

D

I

I

R

A

-

S

-

A

D

D

M

L

P

V

A

N

L

H

L

L

E

L

H

I

V

T

A

E

G

G

H

I

D

D

A

T

I

I

V

M

H

H

F

F

A

A

E

Q

S

T

H

H

V

V

D

D

R

N

S

S

V

F

S

G

D

N

A

S

G

F

I

E

F

F

V

T

D

K

T

N

N

N

V

I

A

Y

G

G

T

T

Q

H

K

V

L

L

E

E

A

A

A

C

R

K

Q

V

L

T

G

G

-

Q

T

I

D

R

R

R

F

F

L

I

Q

H

V

V

S

S

T

T

D

D

E

E

V

V

Y

Y

G

G

S

E

I

T

D

D

E

E

G

D

E

A

W

L

-

V

-

G

-

N

D

H

E

E

E

A

E

S

P

Q

L

L

P

P

N

T

S

N

P

P

Y

Y

A

S

A

A

S

T

K

K

A

A

A

G

S

A

D

E

L

M

M

L

V

V

R

M

A

A

Y

Y

H

G

Q

R

T

S

H

Y

G

G

L

L

D

P

T

V

V

I

M

T

T

T

R

R

C

G

S

N

N

N

N

V

Y

Y

G

G

P

P

H

N

H

Q

F

F

P

P

E

E

K

K

V

L

I

I

P

P

L

K

F

F

V

I

T

L

N

L

L

A

L

M

D

R

G

G

H

Q

P

V

V

L

P

P

L

I

Y

H

G

G

D

D

G

G

G

S

N

N

Q

V

R

R

D

S

W

Y

L

L

H

Y

V

C

D

E

D

D

H

V

C

A

R

E

G

A

I

F

A

E

L

V

V

V

L

L

Q

H

K

K

G

G

T

E

S

V

G

G

E

H

V

V

Y

Y

N

N

I

I

G

G

G

T

G

K

T

K

E

E

L

R

T

R

N

V

K

N

E

D

L

V

T

A

H

K

M

D

L

I

L

C

G

K

L

L

T

F

G

N

R

M

D

D

-

P

D

E

S

A

F

N

I

I

S

K

H

F

V

V

E

D

D

N

R
|
R

L

P

G

F

H

N

D

D

R

Q

R

R

Y

Y

C

F

V

L

S

D

I

D

D

Q

K

K

I

L

S

-

R

K

E

K

L

L

G

G

Y

W

A

S

P

E

E

R

V

T

D

T

F

W

Q

E

E

E

G

G

L

L

A

K

D

K

V

T

V

M

Q

D

W

W

Y

Y

R

T

D

Q

N

N

R

P

G

E

W

W

R283 (= R274) mutation to K: In rol1-2; Abolishes dehydratase activity in vitro (PubMed:16766693). Induces aberrant accumulation of flavonols leading to alterations in plant growth and cell shape formation (PubMed:18567791, PubMed:18757557).

6vloA X-ray structure of the r141 sugar 4,6-dehydratase from acanthamoeba polyphaga minivirus (see paper)
38% identity, 96% coverage: 3:315/327 of query aligns to 6:316/319 of 6vloA

query
sites
6vloA

L

I

F

L

V

V

T

T

G
|
G

G

G

A

L

G
|
G

F
|
F

I
|
I

G

G

S

S

N

N

F

F

V

V

R

N

M

H

A

I

L

S

G

S

G

K

R

-

L

-

P

-

G

-

L

Y

E

D

E

N

A

V

E

N

I

I

T

Y

V

V

F

Y

D
|
D

A
x
I

L

G

T

D

Y

Y

S

C

G
x
A

T

S

L

V

T

E

N

N

L

V

E

E

S

W

V

-

A

-

N

-

H

N

P

N

R

R

F

T

R

K

F

L

I

I

Q

K

G

G

D
|
D

I
|
I

R

R

D

N

M

F

P

D

A

L

L

I

L

M

E

H

H

T

V

L

A

T

G

E

H

H

-

E

-

I

D

D

A

T

I

I

V

V

H

H

F
|
F

A
|
A

E

H

S
|
S

H

H

V

V

D

D

R

N

S

S

V

F

S

K

D

N

A

S

G

L

I

A

F

F

V

T

D

E

T

T

N

N

V

V

A

F

G

G

T

T

Q

H

K

V

L

L

E

E

A

C

A

S

R

R

Q

M

L

Y

G

G

T

K

D

L

R

K

-

L

F

F

L

F

Q

H

V
x
M

S

S

T
|
T

D
|
D

E
|
E

V

V

Y

Y

G

G

S

E

I

I

D

D

E

T

G

T

E

D

W

T

D

S

E

R

E

E

E

V

P

S

L

L

-

C

P

P

N

T

S

N

P

P

Y
|
Y

A

A

S

T

K
|
K

A

A

A

G

S

A

D

E

L

H

M

I

V

V

R

K

A

S

Y

Y

H

F

Q

L

T

S

H

Y

G

K

L

L

D

P

T

I

V

I

M

I

T

A

R

R

C

C

S

N

N
|
N

N

V

Y

Y

G

G

P

R

H

N

H

Q

F

Y

P

P

E

E

K
|
K

V
x
L

I

I

P

P

L
x
K

F

F

V

I

T

C

N

S

L

L

D

D

G

G

H

K

P

K

V

L

P
x
H

L

I

Y
x
Q

G

G

D

T

G

G

G

N

N

S

Q

R

R
|
R

D

N

W

F

L

I

H

H

V

A

D

I

D

D

H

V

C

A

R

D

G

A

I

V

A

D

L

L

V

V

L

I

Q

N

K

N

G

G

T

V

S

I

G

G

E

E

V

T

Y

Y

N

N

I

I

G

G

G

V

G

T

T

N

E

E

L

H

T

S

N
x
V

K

L

E

D

L

V

T

A

H

Q

M

I

L

L

L

C

G

D

L

I

T

A

G

G

R

V

D

N

-

L

D

E

S

N

F

Q

I

L

S

E

H

Y

V

V

E

P

D

D

R
|
R

L

L

G

F

H

N

D

D

R

F

R
|
R

Y

Y

C

N

V

I

S

T

I

N

D

D

K

K

I

I

S

-

R

K

E

S

L

L

G

G

Y

W

-

E

A

Q

P

S

E

R

V

K

D

D

F

F

Q

K

E

K

G

E

L

L

A

V

D

E

V

L

V

F

Q

D

W

W

Y

Y

R

K

D

V

N

N

R

R

active site: T126 (= T127), D127 (= D128), E128 (= E129), Y151 (= Y151), K155 (= K155)
binding nicotinamide-adenine-dinucleotide: G10 (= G7), G13 (= G10), F14 (= F11), I15 (= I12), D36 (= D37), I37 (≠ A38), A42 (≠ G43), D59 (= D63), I60 (= I64), F81 (= F83), A82 (= A84), A83 (= A85), S85 (= S87), M124 (≠ V125), T126 (= T127), K155 (= K155)
binding thymidine-5'-diphosphate: N180 (= N180), K190 (= K190), L191 (≠ V191), K194 (≠ L194), H206 (≠ P206), Q208 (≠ Y208), R215 (= R215), V250 (≠ N250), R275 (= R274), R281 (= R280)

Query Sequence

>WP_104914032.1 NCBI__GCF_002950575.1:WP_104914032.1
MKLFVTGGAGFIGSNFVRMALGGRLPGLEEAEITVFDALTYSGTLTNLESVANHPRFRFI
QGDIRDMPALLEHVAGHDAIVHFAAESHVDRSVSDAGIFVDTNVAGTQKLLEAARQLGTD
RFLQVSTDEVYGSIDEGEWDEEEPLLPNSPYAASKAASDLMVRAYHQTHGLDTVMTRCSN
NYGPHHFPEKVIPLFVTNLLDGHPVPLYGDGGNQRDWLHVDDHCRGIALVLQKGTSGEVY
NIGGGTELTNKELTHMLLGLTGRDDSFISHVEDRLGHDRRYCVSIDKISRELGYAPEVDF
QEGLADVVQWYRDNRGWWEPLKARAAL

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory