SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_106709341.1 NCBI__GCF_003010955.1:WP_106709341.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

Q9X1S1 D-glycerate 2-kinase; GCK; EC 2.7.1.165 from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) (see paper)
39% identity, 98% coverage: 4:412/418 of query aligns to 8:411/417 of Q9X1S1

query
sites
Q9X1S1
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N
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D
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V
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I
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L
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V
G
 
A
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V
G
 
G
K
|
K
G
 
A
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A
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W
Q
 
R
M
 
M
A
 
A
-
 
K
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A
A
 
A
F
 
Y
E
 
E
K
 
V
V
 
L
W
 
G
D
 
K
G
 
K
P
 
I
L
 
R
E
 
K
G
 
G
I
 
V
V
 
V
V
 
V
T
 
T
R
 
K
Y
 
Y
G
 
G
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H
G
 
S
-
 
E
A
 
G
P
 
P
C
 
I
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D
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D
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F
E
 
E
I
 
I
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Y
E
 
E
A
 
A
S
 
G
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H
P
 
P
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P
D
 
D
A
 
E
A
 
N
G
 
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I
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R
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V
L
 
L
E
 
E
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L
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V
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D
G
 
Q
L
 
L
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N
A
 
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D
 
N
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D
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V
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L
A
 
F
L
 
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L
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E
 
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A
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I
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R
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H
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L
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Q
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K
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G
G
 
G
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R
L
 
F
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A
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E
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V
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A
 
A
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K
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V
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A
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D
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D
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A
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L
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K
Y
 
Y
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G
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K
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-
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-
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A
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P
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K
P
 
-
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-
D
 
-
A
 
-
A
 
H
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L
A
 
S
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N
H
 
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E
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I
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H
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N
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K
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N
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M
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K
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N
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G
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I
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G
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R
N
 
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Q
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L
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A
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L
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A
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A
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Y
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Q
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N
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D
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A
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A
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L
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L
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I
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T
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N
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N
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D
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L

Query Sequence

>WP_106709341.1 NCBI__GCF_003010955.1:WP_106709341.1
MQDKEFFTKLFQAAVDAADPARTIAAHLPPRPKGRTIVIGAGKGSAQMASAFEKVWDGPL
EGIVVTRYGFGAPCKHIEIIEASHPVPDAAGLIASRRLLETVSGLTADDLVVALISGGGS
ALLPSPPEGMTLEDEIAVNKVLLASGAPISAMNAVRKHLSTIKGGRLAAAAHPARVFSLI
VSDIPGDNPAFVASGPTVTDETTRDDALRIVARYNLALPEAALAHLRSAKADAPKPSDAA
FAGHEHHLIASAAVSLEAAAKTARRMGVEAVILSDAIEGEAREVAHVHAALAKQVLAKDQ
PFTKPAVILSGGETTVTVRGKGKGGRNSEFLLSLAIDIDGAGGISAFAADTDGIDGSEDN
AGAFADSTTIARLLAKGHDALGHLNSNDAWTAFNAIDDLFVPGPTGTNVNDLRAILIR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory