SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_106711955.1 NCBI__GCF_003010955.1:WP_106711955.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

O31645 PTS system mannose-specific EIIBCA component; EIIBCA-Man; EII-Man; EC 2.7.1.191 from Bacillus subtilis (strain 168) (see 2 papers)
27% identity, 97% coverage: 2:145/149 of query aligns to 501:646/650 of O31645

query
sites
O31645
K
 
K
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L
A
 
T
D
 
D
Y
 
I
I
 
I
A
 
S
P
 
P
E
 
E
G
 
L
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I
L
 
E
F
 
P
D
 
N
L
 
L
D
 
S
A
 
G
S
 
E
S
 
T
K
 
S
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D
E
 
D
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I
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I
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D
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E
M
 
L
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I
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Q
G
 
K
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L
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S
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R
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R
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G
G
 
A
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L
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E
A
 
S
-
 
G
I
 
F
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A
 
A
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I
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L
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N
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R
E
 
E
N
 
Q
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Q
G
 
G
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T
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A
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I
G
 
G
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M
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N
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A
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I
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P
H
 
H
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G
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F
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I
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R
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G
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D
F
 
W
E
 
N
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S
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D
D
 
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L
 
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E
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L
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I
F
 
F
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M
L
 
I
L
 
A
T
 
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P
N
 
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E
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G
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N
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H
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L
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K
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I
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L
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A
 
M
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L
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R
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L

Sites not aligning to the query:

P46321 Probable licABCH operon regulator; EC 2.7.1.- from Bacillus subtilis (strain 168) (see paper)
26% identity, 94% coverage: 6:145/149 of query aligns to 500:635/641 of P46321

query
sites
P46321
Y
 
Y
I
 
L
A
 
K
P
 
K
E
 
E
G
 
L
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V
L
 
F
F
 
F
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Q
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E
D
 
D
A
 
L
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R
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S
K
 
K
T
 
E
E
 
E
A
 
V
L
 
I
Q
 
Q
L
 
F
M
 
L
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G
A
 
Q
G
 
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V
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V
K
 
E
P
 
-
S
 
C
G
 
G
L
 
F
P
 
A
V
 
D
D
 
E
A
 
E
I
 
I
L
 
I
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D
A
 
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L
 
I
Q
 
F
K
 
E
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R
E
 
E
N
 
D
L
 
M
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T
G
 
C
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F
G
 
G
Q
 
N
G
 
L
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V
A
 
A
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I
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P
H
|
H
T
 
P
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L
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P
G
 
Q
I
 
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E
 
K
K
 
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T
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F
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W
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A
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C
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K
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P
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I
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D
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W
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E
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S
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F
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C
I
 
L
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-
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-
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-
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P
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N
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Y
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V
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F

Sites not aligning to the query:

Query Sequence

>WP_106711955.1 NCBI__GCF_003010955.1:WP_106711955.1
MKLADYIAPEGVLFDLDASSKTEALQLMSAGLSKPSGLPVDAILTALQKRENLGSTGVGQ
GIAIPHTRIDGIEKPIGLLARMRKPIDFESIDDLPVDIIFVLLTPNRDTNKHLNVLAAFS
RKLRSPGALKQMRTAKDAQSLYTLFVSLP

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory