SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_110804905.1 NCBI__GCF_003217355.1:WP_110804905.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
36% identity, 81% coverage: 42:254/262 of query aligns to 17:215/215 of 4ymtC

query
sites
4ymtC
K
 
S
G
 
G
I
 
L
G
 
I
I
 
M
T
 
T
V
 
L
F
 
K
V
 
L
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T
L
 
F
F
 
L
A
 
A
F
 
V
A
 
T
G
 
I
A
 
G
L
 
V
V
 
L
L
 
M
G
 
G
L
 
L
V
 
F
L
 
I
A
 
A
V
 
L
A
 
M
S
 
K
L
 
M
S
 
S
R
 
S
H
 
I
L
 
K
I
 
P
W
 
I
R
 
K
Q
 
L
L
 
V
A
 
A
R
 
S
F
 
S
Y
 
Y
T
 
I
E
 
E
V
 
V
I
 
I
R
 
R
G
 
G
V
 
T
P
|
P
I
x
L
I
 
L
V
 
V
M
 
Q
L
 
L
L
 
L
Y
 
L
V
 
I
A
 
-
F
 
-
A
 
-
L
 
-
V
 
-
P
 
-
A
 
-
V
 
-
V
 
Y
A
 
N
G
 
G
W
 
L
N
 
M
A
 
Q
L
 
F
G
 
G
L
 
M
P
 
-
E
 
-
A
 
-
S
 
-
V
 
-
R
 
-
D
 
N
F
 
I
P
 
P
L
 
A
L
 
F
A
 
T
R
 
A
A
 
G
V
 
V
L
 
S
A
 
A
L
 
L
I
 
A
L
 
I
A
x
N
Y
 
S
A
 
S
A
 
A
F
x
Y
L
 
V
A
 
A
E
 
E
V
 
I
F
 
I
R
 
R
A
 
A
G
 
G
L
 
I
L
 
Q
S
 
A
V
 
V
E
 
D
R
 
P
G
 
G
Q
 
Q
I
 
N
E
 
E
A
 
A
A
 
A
K
 
R
A
 
S
L
 
L
G
 
G
L
 
M
N
 
T
G
 
H
W
 
A
L
 
M
R
 
A
F
 
M
R
 
R
L
 
Y
I
 
V
I
 
I
F
 
I
P
 
P
Q
 
Q
A
 
A
F
 
I
R
 
K
T
 
N
V
 
I
L
 
L
P
 
P
P
 
A
L
 
L
G
 
G
N
 
N
D
x
E
F
 
F
V
 
I
A
 
V
M
|
M
V
 
L
K
|
K
D
x
E
S
 
S
S
 
A
L
 
I
V
 
V
S
 
S
V
 
V
L
 
I
G
 
G
V
 
F
A
 
A
D
 
D
I
 
L
T
 
T
Q
 
R
L
 
Q
G
 
A
K
 
D
V
 
I
T
 
I
A
 
Q
A
 
S
G
 
V
N
 
T
F
 
Y
R
 
R
Y
 
Y
F
 
F
E
 
E
T
 
P
Y
 
Y
N
 
I
V
 
I
V
 
I
A
 
A
L
 
A
I
 
I
Y
 
Y
L
 
F
A
 
V
M
 
M
T
 
T
V
 
L
T
 
T
L
 
F
S
 
S
L
 
K
A
 
L
L
 
L
R
 
S
K
 
L
L
 
F
E
 
E
A
 
R
H
 
R
L
 
L
R
 
R

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
35% identity, 81% coverage: 42:253/262 of query aligns to 17:214/214 of 4ymwC

query
sites
4ymwC
K
 
S
G
 
G
I
 
L
G
 
I
I
 
M
T
 
T
V
 
L
F
 
K
V
 
L
T
 
T
L
 
F
F
 
L
A
 
A
F
 
V
A
 
T
G
 
I
A
 
G
L
 
V
V
 
L
L
 
M
G
 
G
L
 
L
V
 
F
L
 
I
A
 
A
V
 
L
A
 
M
S
 
K
L
 
M
S
 
S
R
 
S
H
 
I
L
 
K
I
 
P
W
 
I
R
 
K
Q
 
L
L
 
V
A
 
A
R
 
S
F
 
S
Y
 
Y
T
 
I
E
 
E
V
 
V
I
 
I
R
 
R
G
 
G
V
 
T
P
 
P
I
 
L
I
 
L
V
 
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M
 
Q
L
 
L
L
 
L
Y
 
L
V
 
I
A
 
-
F
 
-
A
 
-
L
 
-
V
 
-
P
 
-
A
 
-
V
 
-
V
 
Y
A
 
N
G
 
G
W
 
L
N
 
M
A
 
Q
L
 
F
G
 
G
L
 
M
P
 
-
E
 
-
A
 
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S
 
-
V
 
-
R
 
-
D
 
N
F
 
I
P
 
P
L
 
A
L
 
F
A
 
T
R
 
A
A
 
G
V
 
V
L
 
S
A
 
A
L
 
L
I
 
A
L
 
I
A
x
N
Y
 
S
A
 
S
A
 
A
F
x
Y
L
 
V
A
 
A
E
 
E
V
 
I
F
 
I
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R
A
 
A
G
 
G
L
 
I
L
 
Q
S
 
A
V
 
V
E
 
D
R
 
P
G
 
G
Q
 
Q
I
 
N
E
 
E
A
 
A
A
 
A
K
 
R
A
 
S
L
 
L
G
 
G
L
 
M
N
 
T
G
 
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W
 
A
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M
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A
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M
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R
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I
 
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Q
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A
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P
 
A
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L
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G
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N
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E
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F
V
 
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M
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L
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A
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V
S
 
S
V
 
V
L
 
I
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G
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F
A
 
A
D
 
D
I
 
L
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T
Q
 
R
L
 
Q
G
 
A
K
 
D
V
 
I
T
 
I
A
 
Q
A
 
S
G
 
V
N
 
T
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Y
R
 
R
Y
 
Y
F
 
F
E
 
E
T
 
P
Y
 
Y
N
 
I
V
 
I
V
 
I
A
 
A
L
 
A
I
 
I
Y
 
Y
L
 
F
A
 
V
M
 
M
T
 
T
V
 
L
T
 
T
L
 
F
S
 
S
L
 
K
A
 
L
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L
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S
K
 
L
L
 
F
E
 
E
A
 
R
H
 
R
L
 
L

Query Sequence

>WP_110804905.1 NCBI__GCF_003217355.1:WP_110804905.1
MSPNADRDFPWWLVALGAAALGLGVAVAADPMHAKIFATLSKGIGITVFVTLFAFAGALV
LGLVLAVASLSRHLIWRQLARFYTEVIRGVPIIVMLLYVAFALVPAVVAGWNALGLPEAS
VRDFPLLARAVLALILAYAAFLAEVFRAGLLSVERGQIEAAKALGLNGWLRFRLIIFPQA
FRTVLPPLGNDFVAMVKDSSLVSVLGVADITQLGKVTAAGNFRYFETYNVVALIYLAMTV
TLSLALRKLEAHLRKRGAPERD

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory