Comparing WP_110806537.1 NCBI__GCF_003217355.1:WP_110806537.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 17 hits to proteins with known functional sites (download)
4eqbA 1.5 angstrom crystal structure of spermidine/putrescine abc transporter substrate-binding protein potd from streptococcus pneumoniae strain canada mdr_19a in complex with calcium and hepes
34% identity, 92% coverage: 22:335/340 of query aligns to 2:309/323 of 4eqbA
Sites not aligning to the query:
Q9I6J1 Putrescine-binding periplasmic protein SpuD from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
33% identity, 100% coverage: 2:340/340 of query aligns to 7:367/367 of Q9I6J1
3ttmA Crystal structure of spud in complex with putrescine (see paper)
33% identity, 94% coverage: 22:339/340 of query aligns to 3:341/341 of 3ttmA
7xjnA Structure of vcpotd1 in complex with norspermidine
32% identity, 94% coverage: 21:338/340 of query aligns to 2:321/322 of 7xjnA
P0AFK9 Spermidine/putrescine-binding periplasmic protein; SPBP from Escherichia coli (strain K12) (see 3 papers)
31% identity, 96% coverage: 16:340/340 of query aligns to 19:348/348 of P0AFK9
Sites not aligning to the query:
1poy1 Spermidine/putrescine-binding protein complexed with spermidine (dimer form) (see paper)
31% identity, 94% coverage: 23:340/340 of query aligns to 3:323/323 of 1poy1
Q9I6J0 Spermidine-binding periplasmic protein SpuE from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
31% identity, 100% coverage: 2:340/340 of query aligns to 7:365/365 of Q9I6J0
P31133 Putrescine-binding periplasmic protein PotF from Escherichia coli (strain K12) (see 3 papers)
29% identity, 98% coverage: 8:340/340 of query aligns to 16:370/370 of P31133
Sites not aligning to the query:
7oywA E.Coli's putrescine receptor variant potf/d (4jdf) with mutations e39d f88l s247d in complex with spermidine (see paper)
29% identity, 94% coverage: 21:340/340 of query aligns to 1:342/348 of 7oywA
8aszA Potf with mutations s87y and a182d in complex with agmatine
29% identity, 94% coverage: 21:339/340 of query aligns to 3:343/343 of 8aszA
7oyvA E.Coli's putrescine receptor variant potf/d (4jdf) with mutations e39d f88a s247d in complex with spermidine (see paper)
29% identity, 94% coverage: 21:339/340 of query aligns to 1:341/341 of 7oyvA
7oyxB E.Coli's putrescine receptor variant potf/d (4jdf) with mutations e39d y87s f88y s247d in complex with spermidine (see paper)
29% identity, 94% coverage: 21:340/340 of query aligns to 1:342/347 of 7oyxB
3ttnA Crystal structures of polyamine receptors spud and spue from pseudomonas aeruginosa (see paper)
31% identity, 93% coverage: 23:337/340 of query aligns to 1:335/335 of 3ttnA
6ye7A E.Coli's putrescine receptor potf complexed with cadaverine (see paper)
28% identity, 94% coverage: 21:339/340 of query aligns to 1:341/341 of 6ye7A