Comparing WP_110806723.1 NCBI__GCF_003217355.1:WP_110806723.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 9 hits to proteins with known functional sites (download)
Q29551 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial; SCOT; 3-oxoacid CoA-transferase 1; Somatic-type succinyl-CoA:3-oxoacid CoA-transferase; SCOT-s; Succinate-coenzyme A transferase; Succinyl-CoA:3-oxoacid CoA transferase; EC 2.8.3.5 from Sus scrofa (Pig) (see 3 papers)
56% identity, 99% coverage: 2:232/233 of query aligns to 40:288/520 of Q29551
Sites not aligning to the query:
1o9lA Succinate:coenzyme-a transferase (pig heart)
56% identity, 98% coverage: 2:230/233 of query aligns to 1:247/468 of 1o9lA
3oxoE Succinyl-coa:3-ketoacid coa transferase from pig heart covalently bound to coa (see paper)
56% identity, 98% coverage: 2:230/233 of query aligns to 1:247/462 of 3oxoE
Sites not aligning to the query:
3k6mC Dynamic domains of succinyl-coa:3-ketoacid-coenzyme a transferase from pig heart. (see paper)
56% identity, 98% coverage: 2:229/233 of query aligns to 1:246/466 of 3k6mC
Sites not aligning to the query:
8i3yA Crystal structure of asct from trypanosoma brucei in complex with succinyl-coa.
49% identity, 94% coverage: 16:233/233 of query aligns to 15:251/459 of 8i3yA
Sites not aligning to the query:
8i40A Crystal structure of asct from trypanosoma brucei in complex with coa.
48% identity, 93% coverage: 16:232/233 of query aligns to 15:250/467 of 8i40A
Sites not aligning to the query:
8i3yD Crystal structure of asct from trypanosoma brucei in complex with succinyl-coa.
48% identity, 92% coverage: 16:230/233 of query aligns to 15:248/471 of 8i3yD
1k6dB Crystal structure of acetate coa-transferase alpha subunit (see paper)
42% identity, 88% coverage: 14:218/233 of query aligns to 13:217/219 of 1k6dB
2ahvA Crystal structure of acyl-coa transferase from e. Coli o157:h7 (ydif)- thioester complex with coa- 1 (see paper)
27% identity, 50% coverage: 100:215/233 of query aligns to 114:248/512 of 2ahvA
Sites not aligning to the query:
>WP_110806723.1 NCBI__GCF_003217355.1:WP_110806723.1
MNKIYGSAGEALDGLLSDGMMLAAGGFGLCGIPEMLIDALVESGIKDITIASNNCGVDGF
GLGKLLDTRQIKKMISSYVGENAEFMRQYLSGELELEFNPQGTLAERMRAGGCGIPGFYT
KTGVGTVVAEGKEHKEFDGETYILERAIVADVSLVKAWKADPSGNAVFRKTARNFNPPAA
MCGKICVMEVEEIVPLGSLDPDTIHLPGIYVHRLIQGQHEKRIEQRTTRKREA
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory