SitesBLAST
Comparing WP_111392326.1 NCBI__GCF_003253485.1:WP_111392326.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
6uziC Crystal structure of dihydrolipoyl dehydrogenase from elizabethkingia anophelis nuhp1
44% identity, 98% coverage: 4:458/465 of query aligns to 5:462/470 of 6uziC
- active site: C45 (= C43), C50 (= C48), S53 (≠ T51), V187 (≠ A184), E191 (= E188), H448 (= H444), E453 (= E449)
- binding flavin-adenine dinucleotide: I12 (≠ L11), G13 (= G12), G15 (= G14), P16 (= P15), G17 (= G16), E36 (= E35), K37 (≠ A36), G43 (= G41), T44 (≠ I42), C45 (= C43), G49 (= G47), C50 (= C48), S53 (≠ T51), K54 (= K52), V117 (≠ W114), G118 (= G115), T147 (= T144), G148 (= G145), I188 (= I185), R276 (≠ V272), D316 (= D311), M322 (≠ A317), L323 (= L318), A324 (= A319)
- binding zinc ion: H448 (= H444), E453 (= E449)
P31023 Dihydrolipoyl dehydrogenase, mitochondrial; Dihydrolipoamide dehydrogenase; Glycine cleavage system L protein; Pyruvate dehydrogenase complex E3 subunit; E3; PDC-E3; EC 1.8.1.4 from Pisum sativum (Garden pea) (Lathyrus oleraceus) (see 2 papers)
43% identity, 100% coverage: 3:465/465 of query aligns to 35:501/501 of P31023
- 67:76 (vs. 35:43, 50% identical) binding FAD
- C76 (= C43) modified: Disulfide link with 81, Redox-active
- C81 (= C48) modified: Disulfide link with 76, Redox-active
- G149 (= G115) binding FAD
- D348 (= D311) binding FAD
- MLAH 354:357 (≠ ALAH 317:320) binding FAD
Sites not aligning to the query:
- 1:31 modified: transit peptide, Mitochondrion
1dxlA Dihydrolipoamide dehydrogenase of glycine decarboxylase from pisum sativum (see paper)
43% identity, 100% coverage: 3:465/465 of query aligns to 1:467/467 of 1dxlA
- active site: L38 (= L39), C42 (= C43), C47 (= C48), S50 (≠ T51), Y184 (≠ A184), E188 (= E188), H444 (= H442), H446 (= H444), E451 (= E449)
- binding flavin-adenine dinucleotide: I9 (≠ L11), P13 (= P15), G14 (= G16), E33 (= E35), K34 (≠ A36), R35 (vs. gap), G40 (= G41), T41 (≠ I42), C42 (= C43), G46 (= G47), C47 (= C48), K51 (= K52), Y114 (≠ W114), G115 (= G115), T144 (= T144), G145 (= G145), Y184 (≠ A184), I185 (= I185), R274 (≠ V272), D314 (= D311), M320 (≠ A317), L321 (= L318), A322 (= A319), H323 (= H320)
3urhB Crystal structure of a dihydrolipoamide dehydrogenase from sinorhizobium meliloti 1021
42% identity, 99% coverage: 6:464/465 of query aligns to 1:465/465 of 3urhB
- active site: Y35 (≠ L39), C39 (= C43), C44 (= C48), S47 (≠ T51), V183 (≠ A184), E187 (= E188), H443 (= H442), H445 (= H444), E450 (= E449)
- binding flavin-adenine dinucleotide: I6 (≠ L11), G7 (= G12), G9 (= G14), P10 (= P15), G11 (= G16), E30 (= E35), K31 (≠ A36), G37 (= G41), T38 (≠ I42), C39 (= C43), G43 (= G47), C44 (= C48), K48 (= K52), T111 (≠ W114), G112 (= G115), A140 (= A143), T141 (= T144), G142 (= G145), I184 (= I185), R273 (≠ V272), G312 (= G310), D313 (= D311), M319 (≠ A317), L320 (= L318), A321 (= A319), H322 (= H320)
7kmyA Structure of mtb lpd bound to 010705 (see paper)
44% identity, 97% coverage: 2:453/465 of query aligns to 1:453/465 of 7kmyA
- active site: W38 (≠ L39), C42 (= C43), C47 (= C48), S50 (≠ T51), A182 (= A184), E186 (= E188), H442 (= H442), H444 (= H444), E449 (= E449)
- binding flavin-adenine dinucleotide: L10 (= L11), G11 (= G12), G13 (= G14), P14 (= P15), V33 (= V34), E34 (= E35), P35 (≠ A36), Y37 (≠ E38), G40 (= G41), V41 (≠ I42), C42 (= C43), G46 (= G47), C47 (= C48), K51 (= K52), Y113 (≠ W114), G114 (= G115), A142 (= A143), T143 (= T144), G144 (= G145), Y162 (= Y164), I183 (= I185), Y277 (≠ I279), G309 (= G310), D310 (= D311), Q316 (≠ A317), L317 (= L318), A318 (= A319)
- binding N~2~-methyl-N~2~-[(5-methyl-1H-indazol-7-yl)sulfonyl]-N-(1-methyl-2-oxo-1,2-dihydropyridin-4-yl)glycinamide: Y17 (= Y18), R94 (≠ M95), G97 (= G98), F100 (= F101), E322 (≠ S323), A382 (= A382), H444 (= H444), E449 (= E449)
Sites not aligning to the query:
4m52A Structure of mtb lpd bound to sl827 (see paper)
44% identity, 97% coverage: 2:453/465 of query aligns to 1:453/465 of 4m52A
- active site: W38 (≠ L39), C42 (= C43), C47 (= C48), S50 (≠ T51), A182 (= A184), E186 (= E188), H442 (= H442), H444 (= H444), E449 (= E449)
- binding flavin-adenine dinucleotide: L10 (= L11), G11 (= G12), G13 (= G14), P14 (= P15), V33 (= V34), E34 (= E35), P35 (≠ A36), Y37 (≠ E38), V41 (≠ I42), C42 (= C43), G46 (= G47), C47 (= C48), K51 (= K52), Y113 (≠ W114), G114 (= G115), A142 (= A143), T143 (= T144), Y162 (= Y164), I183 (= I185), F270 (≠ V272), Y277 (≠ I279), G309 (= G310), D310 (= D311), Q316 (≠ A317), L317 (= L318), A318 (= A319)
- binding N~2~-[(2-amino-5-bromopyridin-3-yl)sulfonyl]-N-(4-methoxyphenyl)-N~2~-methylglycinamide: P14 (= P15), Y17 (= Y18), R94 (≠ M95), F100 (= F101), E322 (≠ S323), A382 (= A382), H444 (= H444)
Sites not aligning to the query:
8u0qA Co-crystal structure of optimized analog tdi-13537 provided new insights into the potency determinants of the sulfonamide inhibitor series (see paper)
44% identity, 97% coverage: 4:453/465 of query aligns to 2:452/464 of 8u0qA
- binding flavin-adenine dinucleotide: L9 (= L11), G10 (= G12), G12 (= G14), P13 (= P15), G14 (= G16), V32 (= V34), E33 (= E35), P34 (≠ A36), Y36 (≠ E38), G39 (= G41), V40 (≠ I42), C41 (= C43), G45 (= G47), C46 (= C48), K50 (= K52), Y112 (≠ W114), G113 (= G115), A141 (= A143), T142 (= T144), G143 (= G145), Y161 (= Y164), I182 (= I185), Y276 (≠ I279), G308 (= G310), D309 (= D311), Q315 (≠ A317), L316 (= L318), A317 (= A319), H318 (= H320)
- binding N-(3-acetamidophenyl)-N~2~-[3-(difluoromethyl)-5-methylbenzene-1-sulfonyl]-N~2~-methylglycinamide: Y16 (= Y18), R93 (≠ M95), G96 (= G98), F99 (= F101), E321 (≠ S323), A381 (= A382), A383 (≠ G384), H443 (= H444), E448 (= E449)
Sites not aligning to the query:
8ct4A Cryo-em structure of mtb lpd bound to inhibitor complex with 2-((2- cyano-n,5-dimethyl-1h-indole)-7-sulfonamido)-n-(4-(oxetan-3-yl)-3,4- dihydro-2h-benzo[b] [1,4]oxazin-7-yl)acetamide
44% identity, 97% coverage: 4:453/465 of query aligns to 2:452/464 of 8ct4A
- binding flavin-adenine dinucleotide: L9 (= L11), G10 (= G12), G12 (= G14), P13 (= P15), E33 (= E35), P34 (≠ A36), Y36 (≠ E38), G39 (= G41), V40 (≠ I42), C41 (= C43), G45 (= G47), C46 (= C48), K50 (= K52), Y112 (≠ W114), G113 (= G115), T142 (= T144), G143 (= G145), Y161 (= Y164), I182 (= I185), Y276 (≠ I279), D309 (= D311), Q315 (≠ A317), L316 (= L318), A317 (= A319)
- binding N~2~-(2-cyano-5-methyl-1H-indole-7-sulfonyl)-N~2~-methyl-N-[4-(oxetan-3-yl)-3,4-dihydro-2H-1,4-benzoxazin-7-yl]glycinamide: Y16 (= Y18), R93 (≠ M95), F99 (= F101), E321 (≠ S323), F377 (= F378), A381 (= A382), A383 (≠ G384), H443 (= H444), E448 (= E449), A449 (= A450), E452 (= E453)
Sites not aligning to the query:
P9WHH9 Dihydrolipoyl dehydrogenase; LPD; Component of peroxynitrite reductase/peroxidase complex; Component of PNR/P; Dihydrolipoamide dehydrogenase; E3 component of alpha-ketoacid dehydrogenase complexes; EC 1.8.1.4 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 2 papers)
44% identity, 97% coverage: 4:453/465 of query aligns to 2:452/464 of P9WHH9
- D5 (= D7) mutation to A: Reduces lipoamide dehydrogenase activity by 95%.
- 33:41 (vs. 35:43, 44% identical) binding FAD
- C41 (= C43) modified: Disulfide link with 46, Redox-active
- N43 (= N45) mutation to A: Reduces lipoamide dehydrogenase activity by 89%.
- C46 (= C48) modified: Disulfide link with 41, Redox-active
- K50 (= K52) binding FAD
- R93 (≠ M95) mutation to A: Reduces lipoamide dehydrogenase activity by 94%.; mutation to E: Reduces lipoamide dehydrogenase activity by 96%.
- K103 (= K105) mutation to E: Reduces lipoamide dehydrogenase activity by 82%.
- D309 (= D311) binding FAD
- A317 (= A319) binding FAD
- H386 (≠ S387) mutation to K: Reduces lipoamide dehydrogenase activity by 91%.
Sites not aligning to the query:
- 464 F→A: Reduces lipoamide dehydrogenase activity by 95%.
3ii4A Structure of mycobacterial lipoamide dehydrogenase bound to a triazaspirodimethoxybenzoyl inhibitor (see paper)
44% identity, 97% coverage: 4:453/465 of query aligns to 1:451/463 of 3ii4A