SitesBLAST
Comparing WP_111606228.1 NCBI__GCF_003259225.1:WP_111606228.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
6jqoA Structure of paaz, a bifunctional enzyme in complex with NADP+ and ccoa (see paper)
57% identity, 97% coverage: 17:692/694 of query aligns to 3:674/678 of 6jqoA
- active site: N157 (= N170), E255 (= E268), C294 (= C307), L483 (= L501)
- binding crotonyl coenzyme a: V97 (= V110), F107 (= F120), S111 (= S124), F158 (= F171), W161 (= W174), R638 (≠ L656)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: N154 (= N167), F156 (= F169), N157 (= N170), T183 (= T196), T230 (= T243), G231 (= G244), S232 (= S245), T235 (= T248), A256 (= A269), D257 (= D270), C294 (= C307)
6jqnA Structure of paaz, a bifunctional enzyme in complex with NADP+ and ocoa (see paper)
57% identity, 97% coverage: 17:692/694 of query aligns to 3:674/678 of 6jqnA
- active site: N157 (= N170), E255 (= E268), C294 (= C307), L483 (= L501)
- binding octanoyl-coenzyme a: F562 (= F580), H565 (= H583), F576 (= F594), G583 (= G601), V595 (= V613), A604 (= A622), N605 (= N623), Y606 (= Y624), F613 (= F631), I614 (= I632)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: R19 (≠ Q32), I153 (= I166), N154 (= N167), A155 (= A168), F156 (= F169), K180 (= K193), A182 (= A195), T183 (= T196), T230 (= T243), G231 (= G244), S232 (= S245), T235 (= T248), L239 (= L252), E255 (= E268), A256 (= A269), D257 (= D270), C294 (= C307), F396 (= F414), H471 (= H489)
6jqmA Structure of paaz with NADPH (see paper)
57% identity, 97% coverage: 17:692/694 of query aligns to 3:674/678 of 6jqmA
- active site: N157 (= N170), E255 (= E268), C294 (= C307), L483 (= L501)
- binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: R19 (≠ Q32), I153 (= I166), N154 (= N167), A155 (= A168), F156 (= F169), N157 (= N170), K180 (= K193), A182 (= A195), T183 (= T196), G231 (= G244), S232 (= S245), T235 (= T248), A256 (= A269), D257 (= D270), C294 (= C307), E394 (= E412), F396 (= F414)
P77455 Bifunctional protein PaaZ; EC 3.3.2.12; EC 1.2.1.91 from Escherichia coli (strain K12) (see paper)
57% identity, 97% coverage: 17:692/694 of query aligns to 4:675/681 of P77455
- E256 (= E268) mutation to Q: Catalyzes the formation of 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde instead of 3-oxo-5,6-dehydrosuberyl-CoA.
2vroA Crystal structure of aldehyde dehydrogenase from burkholderia xenovorans lb400 (see paper)
43% identity, 68% coverage: 16:489/694 of query aligns to 5:484/521 of 2vroA
- active site: N160 (= N170), K183 (= K193), E258 (= E268), C297 (= C307), E401 (= E412)
- binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: I156 (= I166), K183 (= K193), S217 (≠ T227), S235 (= S245), T238 (= T248), L242 (= L252), F403 (= F414)
Sites not aligning to the query:
2y53A Crystal structure of e257q mutant of the box pathway encoded aldh from burkholderia xenovorans lb400 (see paper)
43% identity, 68% coverage: 16:489/694 of query aligns to 5:483/529 of 2y53A
- active site: N160 (= N170), K183 (= K193), Q258 (≠ E268), C297 (= C307), E401 (= E412)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: I156 (= I166), N157 (= N167), F159 (= F169), N160 (= N170), K183 (= K193), A185 (= A195), T186 (= T196), S217 (≠ T227), F232 (= F242), G234 (= G244), S235 (= S245), A236 (= A246), T238 (= T248), A259 (= A269), D260 (= D270), C297 (= C307), F403 (= F414)
Sites not aligning to the query:
Q9HTJ1 NAD/NADP-dependent betaine aldehyde dehydrogenase; BADH; EC 1.2.1.8 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see 2 papers)
27% identity, 73% coverage: 11:517/694 of query aligns to 1:480/490 of Q9HTJ1
- GAWN 150:153 (≠ NAFN 167:170) binding NADPH
- K162 (= K179) active site, Charge relay system
- KPSE 176:179 (≠ KPAT 193:196) binding NADPH
- G209 (vs. gap) binding NADPH
- GTST 230:233 (≠ SAST 245:248) binding NADPH
- E252 (= E268) active site, Proton acceptor
- C286 (= C307) binding covalent; modified: Cysteine sulfenic acid (-SOH)
- E387 (= E412) binding NADPH
- E464 (= E500) active site, Charge relay system
4cazA Crystal structure of betaine aldehyde dehydrogenase from pseudomonas aeruginosa in complex with nadh
27% identity, 72% coverage: 20:517/694 of query aligns to 9:479/489 of 4cazA
- active site: N152 (= N170), K175 (= K193), E251 (= E268), C285 (= C307), E386 (= E412), E463 (= E500)
- binding [[(2R,3S,4R,5R)-5-[(3R)-3-aminocarbonyl-3,4-dihydro-2H-pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanidyl-phosphoryl] [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphate: I148 (= I166), G149 (≠ N167), W151 (≠ F169), N152 (= N170), K175 (= K193), E178 (≠ T196), G208 (vs. gap), G212 (= G228), F226 (= F242), T227 (= T243), G228 (= G244), G229 (≠ S245), T232 (= T248), V236 (≠ L252), E251 (= E268), L252 (≠ A269), C285 (= C307), E386 (= E412), F388 (= F414)
2woxA Betaine aldehyde dehydrogenase from pseudomonas aeruginosa with NAD(p) h-catalytic thiol adduct. (see paper)
27% identity, 72% coverage: 20:517/694 of query aligns to 9:479/489 of 2woxA
- active site: N152 (= N170), K175 (= K193), E251 (= E268), C285 (= C307), E386 (= E412), E463 (= E500)
- binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: I148 (= I166), G149 (≠ N167), W151 (≠ F169), N152 (= N170), K175 (= K193), S177 (≠ A195), E178 (≠ T196), G208 (vs. gap), G212 (= G228), F226 (= F242), T227 (= T243), G228 (= G244), G229 (≠ S245), T232 (= T248), V236 (≠ L252), E251 (= E268), L252 (≠ A269), C285 (= C307), E386 (= E412), F388 (= F414)
2wmeA Crystallographic structure of betaine aldehyde dehydrogenase from pseudomonas aeruginosa (see paper)
27% identity, 72% coverage: 20:517/694 of query aligns to 9:479/489 of 2wmeA
- active site: N152 (= N170), K175 (= K193), E251 (= E268), C285 (= C307), E386 (= E412), E463 (= E500)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: G149 (≠ N167), W151 (≠ F169), K175 (= K193), S177 (≠ A195), E178 (≠ T196), G208 (vs. gap), G212 (= G228), F226 (= F242), G228 (= G244), G229 (≠ S245), T232 (= T248), V236 (≠ L252)
8vr1A Crystal structure of betaine aldehyde dehydrogenase (betb) from klebsiella aerogenes (ctp bound)
25% identity, 72% coverage: 18:517/694 of query aligns to 6:478/488 of 8vr1A
8vr0A Crystal structure of betaine aldehyde dehydrogenase (betb) from klebsiella aerogenes (gmp bound)
25% identity, 72% coverage: 18:517/694 of query aligns to 6:478/488 of 8vr0A
8vqzA Crystal structure of betaine aldehyde dehydrogenase (betb) from klebsiella aerogenes (cmp bound)
25% identity, 72% coverage: 18:517/694 of query aligns to 6:478/488 of 8vqzA
8vqwC Crystal structure of betaine aldehyde dehydrogenase (betb) from klebsiella aerogenes (coa bound)
25% identity, 72% coverage: 18:517/694 of query aligns to 6:478/488 of 8vqwC
- binding coenzyme a: I147 (= I166), W150 (≠ F169), K174 (= K193), S176 (≠ A195), E177 (≠ T196), G207 (vs. gap), G211 (= G228), F225 (= F242), G227 (= G244), G228 (≠ S245), S231 (≠ T248), H331 (≠ Q354), F387 (= F414)
8vj3A Crystal structure of betaine aldehyde dehydrogenase (betb) from klebsiella aerogenes (fad bound)
25% identity, 72% coverage: 18:517/694 of query aligns to 6:478/488 of 8vj3A
8uzoA Crystal structure of betaine aldehyde dehydrogenase (betb) from klebsiella aerogenes (adp bound)
25% identity, 72% coverage: 18:517/694 of query aligns to 6:478/488 of 8uzoA
8uznA Crystal structure of betaine aldehyde dehydrogenase (betb) from klebsiella aerogenes (amp bound)
25% identity, 72% coverage: 18:517/694 of query aligns to 6:478/488 of 8uznA
- binding adenosine monophosphate: I147 (= I166), G148 (≠ N167), K174 (= K193), S176 (≠ A195), E177 (≠ T196), G207 (vs. gap), G211 (= G228), F225 (= F242), G228 (≠ S245), S231 (≠ T248), K234 (= K251)
8uzmA Crystal structure of betaine aldehyde dehydrogenase (betb) from klebsiella aerogenes (NADPH bound)
25% identity, 72% coverage: 18:517/694 of query aligns to 6:478/488 of 8uzmA
- binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: G148 (≠ N167), W150 (≠ F169), K174 (= K193), S176 (≠ A195), E177 (≠ T196), G207 (vs. gap), G211 (= G228), F225 (= F242), T226 (= T243), G227 (= G244), G228 (≠ S245), S231 (≠ T248), E250 (≠ N273), G252 (≠ A275), C284 (= C307), E385 (= E412), F387 (= F414)
8uzkA Crystal structure of betaine aldehyde dehydrogenase (betb) from klebsiella aerogenes (NADP+ bound)
25% identity, 72% coverage: 18:517/694 of query aligns to 6:478/488 of 8uzkA
- binding nadp nicotinamide-adenine-dinucleotide phosphate: I147 (= I166), G148 (≠ N167), W150 (≠ F169), N151 (= N170), K174 (= K193), S176 (≠ A195), E177 (≠ T196), G207 (vs. gap), G211 (= G228), F225 (= F242), G227 (= G244), G228 (≠ S245), S231 (≠ T248), E250 (≠ N273), F387 (= F414)
8skfA Crystal structure of betaine aldehyde dehydrogenase (betb) from klebsiella aerogenes (lattice translocation disorder)
25% identity, 72% coverage: 18:517/694 of query aligns to 15:487/497 of 8skfA
- binding calcium ion: T33 (≠ S36), I34 (vs. gap), D100 (vs. gap), V187 (≠ S197)
- binding nicotinamide-adenine-dinucleotide: I156 (= I166), G157 (≠ N167), A158 (= A168), W159 (≠ F169), K183 (= K193), E186 (≠ T196), G216 (vs. gap), G220 (= G228), T235 (= T243), G236 (= G244), G237 (≠ S245), S240 (≠ T248), K243 (= K251), E259 (≠ N273), C293 (= C307), F396 (= F414)
Query Sequence
>WP_111606228.1 NCBI__GCF_003259225.1:WP_111606228.1
MSQSPVVQSPVARSPVLQSFIAGEWLGNQAGQALASPVNGETIYHTHAETIDFARSLEFA
RTKGRASLMAMDFQSRASCLRDLGKHLLEYKESLYAISLLTGATRNDSWVDIEGGAGTLF
AYASVGRRELPSGNLIHEDDAFPLGRDGQFFGSHILVPRQGVAVHINAFNFPIWGMLEKF
AANFLAGMPCIVKPATSTSYLTEACVRLMHESGLLPEGSLQLIIGRTGDLLDRLDGQDVV
TFTGSASTAAKLKVTPNIINNSIPFNAEADSLNCAILAPDVSVDSPEFELFIKEVAREMT
VKAGQKCTAIRRVLIPENQVQAVSERLTARLAKMSIGDPHLDTVRMGALASFEQKADVLA
QLEQLLKSSQLVCGHDEGFELLGKGSEKGAFIQPTLLLSNDPDADGGAHDIEAFGPISTL
MPYKNIDHAIALAARGKGSLVTTLVTQDPEIARKVVPALAAWHGRVHILNEASSKESTGH
GSPLPMLKHGGPGRAGGGEELGGIRGVKHYMQRAAIQGSPTMLSAVTGEYVRGGETYESD
VHPFRRYFEDLRIGESLLTHRRTVTETDIVNFGCLSGDHFYMHFDDIAARDSQFEQRIAH
GYFVLSAAAGLFVSPGEGPVLANYGLDTLRFITPVPIGDTIRARLTCKRKIDQGKLSPKG
EPQGVVVWDVQVTNQHEELVASYDILTLVKKQFD
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory