Comparing WP_111608933.1 NCBI__GCF_003259225.1:WP_111608933.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
28% identity, 33% coverage: 197:413/649 of query aligns to 59:273/427 of 8b01B
Sites not aligning to the query:
>WP_111608933.1 NCBI__GCF_003259225.1:WP_111608933.1
MLNSGSSNGFQSLLLESKFAGGKERLAVSLLFSVIAAGIAGLVLYGAYYGGITALLLRSA
FFSLVAAAAMLFYALRYKSVAGRGAFYLLTLLALIPGPYLWHNYIDIVMRGAMSIGQDRW
IFMALIAVVFVFVRIAVGRALIILMTLAFLYAYFGDAIPGKYGHSGYDLSRLTSTLMLST
EGVFGVPMGVAVEYIFLFGLFGAILTKIGTGEVFVDIARGVTGRVQGGPGLSAALSSALL
GSLNGSAVANVVTTGTFTIPLMKRVGYSAKLAGAIEAAASSAGQIMPPVMGAAAFLMAEM
IGIPYAEVALAALVPALLYIFALMIAVRLEAGRLNLARDTGAGLQLLLTTLKTKSYLLLP
LVVLIGLMISGKSPTQAAVMGILAGLAVCPWKKETRINMFDLISACKETLTSTLPIVAAV
AAAGVIIGVLNLTGMGLMLSGLIIELGDGNLWAVLLLTALASFVLGMGLPTSAAYLLLAV
LVAPAMTQLGMEALSAHMFIFYFGLVSAITPPVALAAYAAATISGADANETAVESMRLGF
VKLLVPFLFVTMPGVLLIGTTTSVIAAITFATLATASMSIGFSGWLREPLSWLTRLLYVV
AAVLIAWPAAATDTSIAVLGARIIGIVLFAGLLFKASIQTKPNTMKAEV
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory