Comparing WP_157074746.1 NCBI__GCF_001601575.1:WP_157074746.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
2jjgA Crystal structure of the m. Tuberculosis lysine-epsilon aminotransferase (rv3290c) complexed to an inhibitor (see paper)
50% identity, 99% coverage: 3:260/260 of query aligns to 2:254/435 of 2jjgA
Sites not aligning to the query:
2cjhA Lysine aminotransferase from m. Tuberculosis in the internal aldimine form with bound substrate 2-ketoglutarate (see paper)
50% identity, 99% coverage: 3:260/260 of query aligns to 2:254/435 of 2cjhA
Sites not aligning to the query:
2cjgA Lysine aminotransferase from m. Tuberculosis in bound pmp form (see paper)
50% identity, 99% coverage: 3:260/260 of query aligns to 2:254/435 of 2cjgA
Sites not aligning to the query:
2cjdA Lysine aminotransferase from m. Tuberculosis in external aldimine form (see paper)
50% identity, 99% coverage: 3:260/260 of query aligns to 2:254/435 of 2cjdA
Sites not aligning to the query:
2cinA Lysine aminotransferase from m. Tuberculosis in the internal aldimine form (see paper)
50% identity, 99% coverage: 3:260/260 of query aligns to 2:254/435 of 2cinA
Sites not aligning to the query:
P80404 4-aminobutyrate aminotransferase, mitochondrial; (S)-3-amino-2-methylpropionate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; GABA-T; L-AIBAT; EC 2.6.1.19; EC 2.6.1.22 from Homo sapiens (Human) (see 3 papers)
28% identity, 87% coverage: 27:252/260 of query aligns to 78:315/500 of P80404
Sites not aligning to the query:
3nx3A Crystal structure of acetylornithine aminotransferase (argd) from campylobacter jejuni
31% identity, 98% coverage: 7:260/260 of query aligns to 4:209/388 of 3nx3A
Sites not aligning to the query:
1ohyA 4-aminobutyrate-aminotransferase inactivated by gamma-ethynyl gaba (see paper)
27% identity, 88% coverage: 24:252/260 of query aligns to 37:277/461 of 1ohyA
Sites not aligning to the query:
1ohwA 4-aminobutyrate-aminotransferase inactivated by gamma-vinyl gaba (see paper)
27% identity, 88% coverage: 24:252/260 of query aligns to 37:277/461 of 1ohwA
Sites not aligning to the query:
P80147 4-aminobutyrate aminotransferase, mitochondrial; (S)-3-amino-2-methylpropionate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; GABA-T; L-AIBAT; EC 2.6.1.19; EC 2.6.1.22 from Sus scrofa (Pig) (see 3 papers)
27% identity, 88% coverage: 24:252/260 of query aligns to 75:315/500 of P80147
Sites not aligning to the query:
6b6gA Crystal structure of gaba aminotransferase bound to (s)-3-amino-4- (difluoromethylenyl)cyclopent-1-ene-1-carboxylic acid, an potent inactivatorfor the treatment of addiction (see paper)
27% identity, 88% coverage: 24:252/260 of query aligns to 37:277/461 of 6b6gA
Sites not aligning to the query:
4y0iA Gaba-aminotransferase inactivated by conformationally-restricted inactivator
27% identity, 88% coverage: 24:252/260 of query aligns to 37:277/461 of 4y0iA
Sites not aligning to the query:
4y0hD Gamma-aminobutyric acid aminotransferase inactivated by (1s,3s)-3- amino-4-difluoromethylenyl-1-cyclopentanoic acid (cpp-115) (see paper)
27% identity, 88% coverage: 24:252/260 of query aligns to 38:278/463 of 4y0hD
Sites not aligning to the query:
4y0dA Gamma-aminobutyric acid aminotransferase inactivated by (1s,3s)-3- amino-4-difluoromethylenyl-1-cyclopentanoic acid (cpp-115) (see paper)
27% identity, 88% coverage: 24:252/260 of query aligns to 38:278/462 of 4y0dA
Sites not aligning to the query:
P22256 4-aminobutyrate aminotransferase GabT; 5-aminovalerate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; L-AIBAT; EC 2.6.1.19; EC 2.6.1.48 from Escherichia coli (strain K12) (see 2 papers)
30% identity, 85% coverage: 39:260/260 of query aligns to 39:236/426 of P22256
Sites not aligning to the query:
1sffA Structure of gamma-aminobutyrate aminotransferase complex with aminooxyacetate (see paper)
30% identity, 85% coverage: 39:260/260 of query aligns to 38:235/425 of 1sffA
Sites not aligning to the query:
1sf2A Structure of e. Coli gamma-aminobutyrate aminotransferase (see paper)
30% identity, 85% coverage: 39:260/260 of query aligns to 38:235/425 of 1sf2A
Sites not aligning to the query:
1szkA The structure of gamma-aminobutyrate aminotransferase mutant: e211s (see paper)
29% identity, 85% coverage: 39:260/260 of query aligns to 38:235/425 of 1szkA
Sites not aligning to the query:
6erkA Crystal structure of diaminopelargonic acid aminotransferase from psychrobacter cryohalolentis (see paper)
27% identity, 92% coverage: 22:260/260 of query aligns to 28:234/420 of 6erkA
Sites not aligning to the query:
O66442 Acetylornithine aminotransferase; ACOAT; EC 2.6.1.11 from Aquifex aeolicus (strain VF5)
28% identity, 90% coverage: 28:260/260 of query aligns to 17:210/376 of O66442
Sites not aligning to the query:
>WP_157074746.1 NCBI__GCF_001601575.1:WP_157074746.1
MLSPHDVIPTLEKYILVDGFPIVIDLEKSYGSYIVDAKDGTDYLDFYTFFASSPLGLNHP
KLANEEFKERVFRAAVNKVANSDIYTVEMAQFVKTFMEVAAPENFIHLFLIDYGTLAVEN
ALKVAMDWKVRKNIDKGYKESAQKGTKVIHFKEAFHGRSGYALSLTNTADPRKYMYFTKF
NDWPRITNPKIVWPLEKHLDEVKRAENEAINQIKKAIAENPDDICAIIIETIQGEGGDNH
FRPEFFRALREICDENEIML
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory