SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_232311000.1 NCBI__GCF_001189915.1:WP_232311000.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

O14289 3-isopropylmalate dehydratase; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
63% identity, 37% coverage: 6:62/156 of query aligns to 374:430/758 of O14289

query
sites
O14289
I
 
V
S
 
K
G
 
G
R
 
R
P
 
K
V
 
V
A
 
A
A
 
A
S
 
N
V
 
V
R
 
K
L
 
D
A
 
A
L
 
M
V
 
I
V
 
V
P
 
P
G
 
G
S
 
S
G
 
G
P
 
L
V
 
V
K
 
K
E
 
K
Q
 
M
A
 
A
E
 
E
R
 
A
E
 
E
G
 
G
L
 
L
D
 
D
R
 
Q
I
 
I
F
 
F
R
 
I
D
 
E
A
 
A
G
 
G
F
 
F
S
 
D
W
 
W
R
 
R
E
 
E
P
 
A
G
 
G
C
 
C
S
 
S
M
 
M
H
 
C
L
 
L
A
 
G
M
 
M
N
 
N
D
 
P
D
 
D
R
 
Q

Sites not aligning to the query:

Query Sequence

>WP_232311000.1 NCBI__GCF_001189915.1:WP_232311000.1
MNRHRISGRPVAASVRLALVVPGSGPVKEQAEREGLDRIFRDAGFSWREPGCSMHLAMND
DRYGLLPVALGDAAIGYLFRKAEQVPGYCLHVDLQQQTISDDDGWRQEFAISAFTKTCLL
EGWDDIGLTLAHSVEIKAFEQRRFAQRPWLKSAIRM

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory