Comparing WP_245299991.1 NCBI__GCF_002117405.1:WP_245299991.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 13 hits to proteins with known functional sites (download)
4z9nB Abc transporter / periplasmic binding protein from brucella ovis with glutathione bound
42% identity, 91% coverage: 31:350/350 of query aligns to 5:324/324 of 4z9nB
4zv1A An ancestral arginine-binding protein bound to arginine (see paper)
27% identity, 63% coverage: 40:259/350 of query aligns to 3:211/226 of 4zv1A
5t0wA Crystal structure of the ancestral amino acid-binding protein anccdt- 1, a precursor of cyclohexadienyl dehydratase
26% identity, 64% coverage: 32:254/350 of query aligns to 1:210/229 of 5t0wA
4zv2A An ancestral arginine-binding protein bound to glutamine (see paper)
26% identity, 63% coverage: 40:259/350 of query aligns to 3:209/225 of 4zv2A
6svfA Crystal structure of the p235gk mutant of argbp from t. Maritima (see paper)
23% identity, 64% coverage: 34:256/350 of query aligns to 3:210/229 of 6svfA
8ovoA X-ray structure of the sf-iglusnfr-s72a in complex with l-aspartate
23% identity, 65% coverage: 30:256/350 of query aligns to 2:226/503 of 8ovoA
2v25A Structure of the campylobacter jejuni antigen peb1a, an aspartate and glutamate receptor with bound aspartate (see paper)
24% identity, 50% coverage: 34:208/350 of query aligns to 3:172/231 of 2v25A
Sites not aligning to the query:
2vhaA Debp (see paper)
23% identity, 65% coverage: 30:256/350 of query aligns to 4:228/276 of 2vhaA
2ia4B Crystal structure of novel amino acid binding protein from shigella flexneri
23% identity, 65% coverage: 30:256/350 of query aligns to 5:229/278 of 2ia4B
5eyfB Crystal structure of solute-binding protein from enterococcus faecium with bound glutamate
22% identity, 65% coverage: 34:259/350 of query aligns to 6:220/243 of 5eyfB
1xt8B Crystal structure of cysteine-binding protein from campylobacter jejuni at 2.0 a resolution (see paper)
30% identity, 26% coverage: 28:117/350 of query aligns to 1:90/251 of 1xt8B
Sites not aligning to the query:
7a99B Crystal structure of the phe57trp mutant of the arginine-bound form of domain 1 from tmargbp (see paper)
31% identity, 24% coverage: 34:118/350 of query aligns to 2:83/130 of 7a99B
Sites not aligning to the query:
2yjpA Crystal structure of the solute receptors for l-cysteine of neisseria gonorrhoeae (see paper)
29% identity, 25% coverage: 31:117/350 of query aligns to 1:87/247 of 2yjpA
Sites not aligning to the query:
>WP_245299991.1 NCBI__GCF_002117405.1:WP_245299991.1
MKFAILLFLLMAFGLVAGAPRLAAQPESKASSTLQEIRRRGVVVCGATAPAPGFAVMDEA
GSWSGFDIDFCRALAVAALDDPQKIRIETLQQKQRLPALHSGDVDVLLSGAPWTEAREAG
HQLLYGAISFYGGQGFLGRRAWGPTGEPWRGAGGTPPRVCVQQGGSSELNLAQFYREHGV
AYRPVAFGSLEEAARAYDAGDCDLFSADLVELHQWRSRLQKPDDHVVAPALISKSPLGPI
VRQGDDQWFNVVRWTLFAMVDAEELGVDAKTVDAALSSDIPDLRRLVGSDGDFGEGLGLR
PDWAYRVIHEVGNYAEVFDRNLGKSSPFAMERRQNALWSKGGLMYAPPVR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory