Comparing YP_001313206.1 NCBI__GCF_000017145.1:YP_001313206.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3uugA Crystal structure of the periplasmic sugar binding protein chve (see paper)
78% identity, 92% coverage: 26:353/355 of query aligns to 1:328/329 of 3uugA
3urmA Crystal structure of the periplasmic sugar binding protein chve (see paper)
78% identity, 92% coverage: 26:353/355 of query aligns to 1:328/329 of 3urmA
4wwhA Crystal structure of an abc transporter solute binding protein (ipr025997) from mycobacterium smegmatis (msmeg_1704, target efi- 510967) with bound d-galactose
65% identity, 92% coverage: 27:353/355 of query aligns to 2:328/329 of 4wwhA
4ys6A Crystal structure of an abc transporter solute binding protein (ipr025997) from clostridium phytofermentans (cphy_1585, target efi- 511156) with bound beta-d-glucose
51% identity, 92% coverage: 29:353/355 of query aligns to 2:323/324 of 4ys6A
3ma0A Closed liganded crystal structure of xylose binding protein from escherichia coli (see paper)
38% identity, 91% coverage: 30:353/355 of query aligns to 5:307/313 of 3ma0A
4rxuA Crystal structure of carbohydrate transporter solute binding protein caur_1924 from chloroflexus aurantiacus, target efi-511158, in complex with d-glucose
36% identity, 92% coverage: 30:355/355 of query aligns to 6:338/340 of 4rxuA
4ywhA Crystal structure of an abc transporter solute binding protein (ipr025997) from actinobacillus succinogenes 130z (asuc_0499, target efi-511068) with bound d-xylose
37% identity, 91% coverage: 30:351/355 of query aligns to 6:306/310 of 4ywhA
6ruxA P46, an immunodominant surface protein from mycoplasma hyopneumoniae (see paper)
27% identity, 87% coverage: 30:337/355 of query aligns to 13:368/373 of 6ruxA
6s3tA P46, an immunodominant surface protein from mycoplasma hyopneumoniae (see paper)
27% identity, 87% coverage: 30:337/355 of query aligns to 15:370/374 of 6s3tA
8fxuA Thermoanaerobacter thermosaccharolyticum periplasmic glucose-binding protein glucose complex: badan conjugate attached at f17c (see paper)
29% identity, 67% coverage: 70:308/355 of query aligns to 45:279/310 of 8fxuA
Sites not aligning to the query:
4yo7A Crystal structure of an abc transporter solute binding protein (ipr025997) from bacillus halodurans c-125 (bh2323, target efi- 511484) with bound myo-inositol
23% identity, 81% coverage: 54:339/355 of query aligns to 29:286/287 of 4yo7A
Sites not aligning to the query:
P0AEE5 D-galactose/methyl-galactoside binding periplasmic protein MglB; D-galactose-binding periplasmic protein; GBP; D-galactose/D-glucose-binding protein; GGBP from Escherichia coli (strain K12) (see 4 papers)
27% identity, 80% coverage: 54:337/355 of query aligns to 49:325/332 of P0AEE5
Sites not aligning to the query:
P23905 D-galactose/methyl-galactoside binding periplasmic protein MglB; D-galactose-binding periplasmic protein; GBP; D-galactose/D-glucose-binding protein; GGBP from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 2 papers)
27% identity, 80% coverage: 54:337/355 of query aligns to 49:325/332 of P23905
Sites not aligning to the query:
2qw1A Glucose/galactose binding protein bound to 3-o-methyl d-glucose (see paper)
27% identity, 80% coverage: 54:337/355 of query aligns to 25:301/305 of 2qw1A
2gbpA Sugar and signal-transducer binding sites of the escherichia coli galactose chemoreceptor protein (see paper)
27% identity, 80% coverage: 54:337/355 of query aligns to 26:302/309 of 2gbpA
Sites not aligning to the query:
3ga5A X-ray structure of glucose/galactose receptor from salmonella typhimurium in complex with (2r)-glyceryl-beta-d-galactopyranoside (see paper)
27% identity, 80% coverage: 54:337/355 of query aligns to 24:300/305 of 3ga5A
Sites not aligning to the query:
1gcaA The 1.7 angstroms refined x-ray structure of the periplasmic glucose(slash)galactose receptor from salmonella typhimurium (see paper)
27% identity, 80% coverage: 54:337/355 of query aligns to 26:302/309 of 1gcaA
Sites not aligning to the query:
4z0nA Crystal structure of a periplasmic solute binding protein (ipr025997) from streptobacillus moniliformis dsm-12112 (smon_0317, target efi- 511281) with bound d-galactose
27% identity, 79% coverage: 60:340/355 of query aligns to 32:304/307 of 4z0nA
Sites not aligning to the query:
8fxtA Escherichia coli periplasmic glucose-binding protein glucose complex: acrylodan conjugate attached at w183c (see paper)
27% identity, 80% coverage: 54:337/355 of query aligns to 25:301/305 of 8fxtA
Sites not aligning to the query:
5kwsA Crystal structure of galactose binding protein from yersinia pestis in the complex with beta d glucose
25% identity, 80% coverage: 54:337/355 of query aligns to 26:302/307 of 5kwsA
Sites not aligning to the query:
>YP_001313206.1 NCBI__GCF_000017145.1:YP_001313206.1
MKFFTSLLAAAAMTVAGFAAPAVAQDKGMVGISMPTKTSTRWISDGETMEKLFKDAGYTP
DLQFADDDIPNQLAQIENMVTKGAKVLVIGAIDGTTLSDILQKAADAGVKVIAYDRLIRD
SGNVDYYATFDNFQVGVLQATSLVEGLKLDSATEPKNIELFGGSPDDNNAFFFYDGAMSV
LQPLIDSGKLVVKSGQMGMDQVGTLRWDGAVAQARMENLLSSAYTDAKVDGVLSPYDGLS
IGIISALKGVGYGSGDMPMPIVTGQDAELPSVKSILAGEQHSTVFKDTRELAKVTVNMVN
AIMDGKEPEVNDTKTYENGVKVVPSYLLKPVSVDKSNAKDVLVGSGYYTEDQLNN
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory