Comparing YP_001328497.1 NCBI__GCF_000017145.1:YP_001328497.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 11 hits to proteins with known functional sites (download)
3lzkC The crystal structure of a probably aromatic amino acid degradation protein from sinorhizobium meliloti 1021
95% identity, 100% coverage: 1:337/338 of query aligns to 7:343/343 of 3lzkC
8gstC Crystal structure of l-2,4-diketo-3-deoxyrhamnonate hydrolase from sphingomonas sp. (Pyruvate bound-form) (see paper)
27% identity, 61% coverage: 108:314/338 of query aligns to 93:266/290 of 8gstC
Sites not aligning to the query:
8gsrA Crystal structure of l-2,4-diketo-3-deoxyrhamnonate hydrolase from sphingomonas sp. (Apo-form) (see paper)
27% identity, 61% coverage: 108:314/338 of query aligns to 93:266/290 of 8gsrA
6j5xB Crystal structure of fumarylpyruvate hydrolase from corynebacterium glutamicum in complex with mn2+ and pyruvate (see paper)
27% identity, 61% coverage: 59:264/338 of query aligns to 50:242/280 of 6j5xB
6j5xA Crystal structure of fumarylpyruvate hydrolase from corynebacterium glutamicum in complex with mn2+ and pyruvate (see paper)
27% identity, 61% coverage: 59:264/338 of query aligns to 50:242/280 of 6j5xA
O06724 Oxaloacetate tautomerase YisK; Oxaloacetate decarboxylase YisK; EC 5.3.2.2; EC 4.1.1.112 from Bacillus subtilis (strain 168) (see paper)
27% identity, 58% coverage: 70:266/338 of query aligns to 84:268/301 of O06724
Sites not aligning to the query:
8sutA Crystal structure of yisk from bacillus subtilis in complex with reaction product 4-hydroxy-2-oxoglutaric acid (see paper)
27% identity, 58% coverage: 70:266/338 of query aligns to 85:269/303 of 8sutA
8skyB Crystal structure of yisk from bacillus subtilis in complex with oxalate (see paper)
27% identity, 58% coverage: 70:266/338 of query aligns to 84:268/303 of 8skyB
3r6oA Crystal structure of a probable 2-hydroxyhepta-2,4-diene-1, 7- dioateisomerase from mycobacterium abscessus (see paper)
27% identity, 46% coverage: 109:264/338 of query aligns to 76:226/265 of 3r6oA
4dbhA Crystal structure of cg1458 with inhibitor (see paper)
24% identity, 54% coverage: 82:264/338 of query aligns to 66:239/269 of 4dbhA
6iymA Fumarylacetoacetate hydrolase (eafah) from psychrophilic exiguobacterium antarcticum (see paper)
25% identity, 66% coverage: 43:264/338 of query aligns to 30:240/277 of 6iymA
>YP_001328497.1 NCBI__GCF_000017145.1:YP_001328497.1
MKLATLKDSTRDGKLVVVSKDLTRCSEVGHIARTLQAALDDWVHAGPRLERVAEGIETGS
QPTMRFHEHHAASPLPRAFQWADGSAYVNHVELVRKARNAEMPASFWTDPLIYQGGSDSF
LGPRDPILITDEAWGIDMEGEVAVIVDDVAMGATLDEAKAAIRLIMLVNDVSLRGLIPGE
LAKGFGFYQSKPSSAFSPVAVTPEELGEAWDGGKLHLPLHVDLNGEPFGRADAGVDMTFD
FPSLIVHAARTRPLSAGTIIGSGTVSNKLDGGPGKPVSKGGAGYSCIAELRMIETIEGGA
PKTQFLKAGDVVRIEMKDRAGHSIFGAIEQKVGKYERG
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory