Comparing YP_004134408.1 NCBI__GCF_000185905.1:YP_004134408.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
54% identity, 98% coverage: 1:238/242 of query aligns to 1:238/240 of 1ji0A
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
33% identity, 96% coverage: 6:238/242 of query aligns to 4:253/254 of 1g6hA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
33% identity, 96% coverage: 6:238/242 of query aligns to 4:253/253 of 1g9xB
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
33% identity, 96% coverage: 6:238/242 of query aligns to 2:235/240 of 6mjpA
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
31% identity, 96% coverage: 6:238/242 of query aligns to 2:235/235 of 6mhzA
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
31% identity, 96% coverage: 6:238/242 of query aligns to 2:235/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
31% identity, 96% coverage: 6:238/242 of query aligns to 2:235/238 of 6s8gA
6mbnA Lptb e163q in complex with atp (see paper)
31% identity, 96% coverage: 6:238/242 of query aligns to 3:236/241 of 6mbnA
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
31% identity, 96% coverage: 6:237/242 of query aligns to 2:234/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
31% identity, 96% coverage: 6:237/242 of query aligns to 2:234/234 of 4p31A
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
31% identity, 95% coverage: 6:236/242 of query aligns to 2:233/233 of 6b8bA
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
31% identity, 93% coverage: 6:230/242 of query aligns to 1:230/240 of 4ymuJ
4yerA Crystal structure of an abc transporter atp-binding protein (tm_1403) from thermotoga maritima msb8 at 2.35 a resolution
30% identity, 92% coverage: 4:226/242 of query aligns to 2:223/285 of 4yerA
6z4wA Ftse structure from streptococcus pneumoniae in complex with adp (space group p 1) (see paper)
31% identity, 90% coverage: 12:230/242 of query aligns to 9:230/230 of 6z4wA
A0A0H2ZM82 Cell division ATP-binding protein FtsE from Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) (see paper)
31% identity, 90% coverage: 12:230/242 of query aligns to 9:230/230 of A0A0H2ZM82
6z67B Ftse structure of streptococcus pneumoniae in complex with amppnp at 2.4 a resolution (see paper)
32% identity, 86% coverage: 12:218/242 of query aligns to 9:218/229 of 6z67B
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
33% identity, 88% coverage: 18:229/242 of query aligns to 17:231/343 of P30750
Sites not aligning to the query:
P34358 ABC transporter ced-7; Cell death protein 7 from Caenorhabditis elegans (see 2 papers)
32% identity, 85% coverage: 21:226/242 of query aligns to 562:764/1704 of P34358
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
32% identity, 88% coverage: 18:229/242 of query aligns to 18:232/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
32% identity, 88% coverage: 18:229/242 of query aligns to 18:232/344 of 3tuiC
Sites not aligning to the query:
>YP_004134408.1 NCBI__GCF_000185905.1:YP_004134408.1
MDFEIVLSADRIVARYGAIEALHGVSLSVKRGQIVALLGANGAGKSTVLRTLSGLIAASS
GNVRFLGEDITKAPAHRLPHRGLVHVPEGRRIFGDMTIKENLDLGSFTLADDTERRRRLD
HVFELFPILARRKNGDARNLSGGEQQMLAIGRALMAAPKVLLLDEPSMGLAPQLIKEVMN
IVQRLNRQGVTILLVEQNSKVALKFADYGYVLKAGRIVLEGPGSELASNEAVISAYLGGV
AT
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory