Comparing YP_004139304.1 NCBI__GCF_000185905.1:YP_004139304.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
A0A0H2ZQB9 Ergothioneine transporter EgtUBC from Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) (see paper)
36% identity, 46% coverage: 141:276/295 of query aligns to 60:195/506 of A0A0H2ZQB9
Sites not aligning to the query:
B5Z7I3 Ergothioneine transport permease/ergothioneine binding protein EgtU from Helicobacter pylori (strain G27) (see paper)
27% identity, 62% coverage: 106:288/295 of query aligns to 63:247/553 of B5Z7I3
Sites not aligning to the query:
>YP_004139304.1 NCBI__GCF_000185905.1:YP_004139304.1
MDWLTNFPHLNDEALRLVKKGLDDAFRTFTRTYGDSIEGLFAPLQYLLIKCEHFLTDTPW
PLIISLAAGLAWLASRNLTTVAGTVVTLVAIGFLNMWDDTMKTVSMILVSTIIAIVLGAP
VGIAMSRSERIQRVINPVLDVMQTMPSFVYLIPVVMLLGIGKVPGVIAVVIYAIPPMIRL
TNLGIRLVDKDVLEAADAFGSSNWQKLRDVQIPLALPTIMAGVNQTIMMALAMVVIASMI
GVQGLGQPVLKAINNQYFTLGLFNGLAIVGIAIIFDRISQAYGKRLQRHLELMHA
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory