Comparing YP_004139565.1 NCBI__GCF_000185905.1:YP_004139565.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
30% identity, 32% coverage: 12:203/593 of query aligns to 1:180/427 of 8b01B
Sites not aligning to the query:
8y4wA Sialic acid bound form of tripartite atp-independent periplasmic (trap) transporter from fusobacterium nucleatum.
24% identity, 35% coverage: 311:518/593 of query aligns to 415:608/612 of 8y4wA
Sites not aligning to the query:
>YP_004139565.1 NCBI__GCF_000185905.1:YP_004139565.1
MEFIAQNMAPIMFASLIIFLLIGYPVAFSLAANGLMFFFIGVLLSPYSGGSINLAWPLLH
ALPDNFYGSRVMSNDTLLAIPFFTFMGIVLERSGMAEDLLDTIGQLFGPIRGGLAYAVIF
VGALLAATTGVVAASVIAMGLISLPIMLRYGYDRRLASGVIAASGTLAQIIPPSLVLIVL
ADQLGRSVGDMYAGALIPGLVLTGLYMSYILIMSIIRPNSMPALPLEARTLGHGVMSLLV
ALLVTSAVSYAAYRYLAPAHGDNADILGATAGVLFIYIVAIADKRLNFNMMSRLAQQVII
VLIPPLALIFLVLGTIFLGIATPTEGGAMGSVGALFMAAAKGRLSLDVVKQALASTTRLS
SFVLFILIGARVFSLTFYGVNGHIWVEHLLTSLPGGEVGFLIGVNMLVFFLAFFLDFFEL
AFIIVPLLAPAADKLGIDLIWFGVLLGVNMQTSFMHPPFGFALFYLRSVAARVPYLDRLT
GKQIAPVTTGQIYWGAVPFVCIQVIMIGLTIAFPQMVMHYKGTTVDPGTIDYKVPEVPGL
SPLGTPPADGAAPAGGATAPAAPDLSQPPSFGDPTPAKPAAPQPDLSQPPSFN
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory