Comparing YP_004139912.1 NCBI__GCF_000185905.1:YP_004139912.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 13 hits to proteins with known functional sites (download)
4qhqA The structure of a nutrient binding protein from burkholderia cenocepacia bound to methionine
51% identity, 83% coverage: 49:284/284 of query aligns to 2:241/241 of 4qhqA
4yahX Crystal structure of the methionine binding protein, metq (see paper)
44% identity, 85% coverage: 45:284/284 of query aligns to 1:243/245 of 4yahX
3tqwA Structure of a abc transporter, periplasmic substrate-binding protein from coxiella burnetii (see paper)
43% identity, 80% coverage: 49:276/284 of query aligns to 2:228/235 of 3tqwA
3k2dA Crystal structure of immunogenic lipoprotein a from vibrio vulnificus (see paper)
42% identity, 82% coverage: 45:277/284 of query aligns to 4:237/237 of 3k2dA
P04846 Lipoprotein 28 from Escherichia coli (strain K12) (see paper)
39% identity, 83% coverage: 43:278/284 of query aligns to 28:266/272 of P04846
Sites not aligning to the query:
4ib2A Crystal structure of a putative lipoprotein (rumgna_00858) from ruminococcus gnavus atcc 29149 at 1.76 a resolution
39% identity, 83% coverage: 43:278/284 of query aligns to 2:241/247 of 4ib2A
1xs5A The crystal structure of lipoprotein tp32 from treponema pallidum (see paper)
35% identity, 82% coverage: 47:278/284 of query aligns to 3:234/240 of 1xs5A
6dzxA Crystal structure of the n. Meningitides methionine-binding protein in its d-methionine bound conformation. (see paper)
40% identity, 75% coverage: 65:278/284 of query aligns to 19:231/240 of 6dzxA
3gxaC Crystal structure of gna1946 (see paper)
39% identity, 82% coverage: 47:278/284 of query aligns to 1:232/244 of 3gxaC
6jf1A Crystal structure of the substrate binding protein of a methionine transporter from streptococcus pneumoniae (see paper)
38% identity, 78% coverage: 49:269/284 of query aligns to 13:245/260 of 6jf1A
Sites not aligning to the query:
4oteB Crystal structure of a putative lipoprotein (cd630_1653) from clostridium difficile 630 at 2.20 a resolution
37% identity, 75% coverage: 71:284/284 of query aligns to 28:240/240 of 4oteB
1p99A 1.7a crystal structure of protein pg110 from staphylococcus aureus (see paper)
35% identity, 81% coverage: 49:278/284 of query aligns to 2:236/255 of 1p99A
4ntlA Crystal structure of a lipoprotein, yaec family (ef3198) from enterococcus faecalis v583 at 1.80 a resolution
30% identity, 84% coverage: 47:284/284 of query aligns to 2:242/242 of 4ntlA
>YP_004139912.1 NCBI__GCF_000185905.1:YP_004139912.1
MTDFKNTLPSSPGSTVNRRSGLALLFASVVAIGSLIAPHASFAEDKKAIKVGIISGEDED
VWRVVVAQAAEKGLAIETVVFNDYTQPNEALERGEIDANAFQHQPYLDNQIKTQGYHIVR
VGYTGVWPIGLYSKKFSKVADLPEGAVIGVPNDPSNEGRALRVLQNEGVIKLRDGTGILA
TTADIAENAKKVVIKELDAGIVGRSVEDLDAAVVNTDWALKSGLSPENRIAQEPIADNPY
RNFIAVKTGNENEAWVKTLVASYQNEAVKAEFDKVYKGTGLSAY
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory