Comparing YP_004140424.1 NCBI__GCF_000185905.1:YP_004140424.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 4 hits to proteins with known functional sites (download)
7wxiA Gpr domain of drosophila p5cs filament with glutamate and atpgammas (see paper)
36% identity, 94% coverage: 19:422/428 of query aligns to 5:406/430 of 7wxiA
7wxgA Gpr domain closed form of drosophila p5cs filament with glutamate, atp, and NADPH (see paper)
36% identity, 94% coverage: 19:422/428 of query aligns to 5:406/430 of 7wxgA
4jbeB 1.95 angstrom crystal structure of gamma-glutamyl phosphate reductase from saccharomonospora viridis.
30% identity, 94% coverage: 18:420/428 of query aligns to 10:407/412 of 4jbeB
4pz2B Structure of zm aldh2-6 (rf2f) in complex with NAD (see paper)
31% identity, 39% coverage: 114:280/428 of query aligns to 137:304/494 of 4pz2B
Sites not aligning to the query:
>YP_004140424.1 NCBI__GCF_000185905.1:YP_004140424.1
MLKLHEKSGDDTVALMADIGRRARAAARPLAIATTAAKNAALLAMAEAIVAREQDILDAN
AIDVSNGHESGLSTSFMDRLKLDPARIRAMADGIREIAALRDPVGDVIAQWDRPNGLHIE
RVRTPLGVVGVIYESRPNVTADAGALCLKAGNPVILRGGSDSLNSSAAIHACLVEGLKQA
GLPEDAIQLVPTTDRAAVGEMLKGLGGNLDVIIPRGGKSLVGRVQAEARVPVFAHLEGIC
HLYIDRSAKLDMAVRIAVNAKMRRTGVCGAAETLLVDRAVASTHLVPILDALRAAGCEIH
ADAEVLKVFFDAKPATDADWVTEYLDAIIAVKLVDGIGGAIEHIETFSSHHTEAIVAEDA
QAVERFFNEIDSAILLHNASTQFADGGEFGMGAEIGIATGKMHARGPVGVEQLTSFKYRV
RGSGQVRP
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory