Comparing YP_004140774.1 NCBI__GCF_000185905.1:YP_004140774.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
P94530 Arabinooligosaccharides transport system permease protein AraQ from Bacillus subtilis (strain 168) (see paper)
31% identity, 91% coverage: 21:277/282 of query aligns to 24:274/281 of P94530
P68183 Maltose/maltodextrin transport system permease protein MalG from Escherichia coli (strain K12) (see 2 papers)
28% identity, 82% coverage: 48:277/282 of query aligns to 49:289/296 of P68183
>YP_004140774.1 NCBI__GCF_000185905.1:YP_004140774.1
MIGQSPLRTVIAHAMLILGILIVAFPIYYTFVASTQTLQTILRPPLPLLPGDQFWNNYSE
ALFGGVGRIGGVSVGRLLLNTTIMALGIAVGKIFISILSAYAIVFFRFPLRMTFFWLIFI
TLMLPVEVRILPTYKVMVDLGMIDTYAGLIIPLIASATATLLFRQFFMTIPGELVEAARV
DGAGPWRFFFDILLPLSRTNIAALFVILFIYGWTQYLWPLLVTNSSNMNTIVIALRKMVS
FADADTQWHLVMVTAMLAIVPPILVVVLMQRWFVRGLVDSEK
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory