SitesBLAST – Find functional sites

 

SitesBLAST

Comparing YP_004142526.1 NCBI__GCF_000185905.1:YP_004142526.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

8wm8B Cryo-em structure of cyanobacterial nitrate/nitrite transporter nrtbcd in complex with nitrate (see paper)
27% identity, 56% coverage: 99:241/257 of query aligns to 106:251/265 of 8wm8B

query
sites
8wm8B
L
 
V
E
 
D
P
 
P
F
 
I
V
 
F
S
 
Q
F
 
V
A
 
L
R
 
R
Y
 
T
L
 
V
P
 
P
A
 
P
S
 
L
A
 
A
F
 
W
I
 
L
P
 
P
L
 
I
L
 
S
I
 
L
L
 
A
W
 
A
A
 
F
G
 
Q
I
 
Q
G
 
A
E
 
N
L
 
P
E
 
S
K
 
A
L
 
I
L
 
F
V
 
V
I
 
I
F
 
F
V
 
I
G
 
T
S
 
S
V
 
I
F
 
W
Q
 
P
I
 
I
V
 
L
L
 
L
I
 
N
I
 
T
A
 
T
V
 
V
K
 
G
V
 
V
G
 
Q
G
 
Q
T
 
I
R
 
P
R
 
Q
D
 
D
L
 
Y
V
 
I
E
 
N
A
 
V
A
 
A
Y
 
K
T
 
V
L
 
L
G
 
R
S
 
L
T
 
K
N
 
G
S
 
V
G
 
K
I
 
Y
V
 
F
N
 
F
R
 
K
V
 
I
I
 
V
M
 
F
P
 
P
A
 
A
N
 
T
A
 
V
P
 
P
E
 
Y
I
 
I
A
 
F
E
 
T
T
 
G
L
 
L
R
 
R
L
 
I
V
 
G
L
 
I
G
 
G
W
 
L
A
 
S
W
 
W
T
x
L
Y
 
A
V
 
I
I
 
V
V
x
A
A
 
A
E
 
E
L
 
M
I
 
L
G
 
V
S
 
G
S
 
G
S
 
V
G
 
G
I
 
I
G
 
G
Y
 
S
M
 
F
I
 
I
-
 
W
-
 
D
-
 
A
I
 
Y
N
 
N
S
 
T
Q
 
T
S
 
T
R
 
E
L
 
T
A
 
N
T
 
L
G
 
S
Q
 
E
I
 
I
I
 
I
F
 
L
G
 
A
I
 
L
I
 
I
V
 
Y
I
 
V
G
 
G
L
 
L
I
 
V
G
 
G
L
 
L
L
 
L
S
 
L
D
 
D

Query Sequence

>YP_004142526.1 NCBI__GCF_000185905.1:YP_004142526.1
MRPLHPVSPGIRTVLGISFFVLFVAFWAWITLGGHVNRIFLADPLSMLRDGWRLLVEDRF
WLDVLITIWRVFGGFLLASVVAVPLGIAMGAWKPVEAFLEPFVSFARYLPASAFIPLLIL
WAGIGELEKLLVIFVGSVFQIVLIIAVKVGGTRRDLVEAAYTLGSTNSGIVNRVIMPANA
PEIAETLRLVLGWAWTYVIVAELIGSSSGIGYMIINSQSRLATGQIIFGIIVIGLIGLLS
DFAFKAFNRWLFPWSLA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory