Comparing YP_004142653.1 NCBI__GCF_000185905.1:YP_004142653.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 13 hits to proteins with known functional sites (download)
P9WKJ5 Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
49% identity, 97% coverage: 6:559/574 of query aligns to 14:573/575 of P9WKJ5
6ovtA Crystal structure of ilvd from mycobacterium tuberculosis (see paper)
49% identity, 97% coverage: 6:559/574 of query aligns to 1:560/562 of 6ovtA
Q9LIR4 Dihydroxy-acid dehydratase, chloroplastic; AthDHAD; DAD; EC 4.2.1.9 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
44% identity, 95% coverage: 13:560/574 of query aligns to 57:606/608 of Q9LIR4
8hs0A The mutant structure of dhad v178w
43% identity, 97% coverage: 5:560/574 of query aligns to 11:568/570 of 8hs0A
8imuA Dihydroxyacid dehydratase (dhad) mutant-v497f
41% identity, 95% coverage: 13:560/574 of query aligns to 16:521/523 of 8imuA
B5ZZ34 L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum bv. trifolii (strain WSM2304) (see 2 papers)
34% identity, 93% coverage: 25:558/574 of query aligns to 27:561/579 of B5ZZ34
5j85A Ser480ala mutant of l-arabinonate dehydratase (see paper)
34% identity, 93% coverage: 25:558/574 of query aligns to 24:558/576 of 5j85A
8epzA Crystal structure of fe-s cluster-dependent dehydratase from paralcaligenes ureilyticus in complex with mn
34% identity, 93% coverage: 25:558/574 of query aligns to 19:551/569 of 8epzA
8ej0A Crystal structure of fe-s cluster-dependent dehydratase from paralcaligenes ureilyticus in complex with mg
34% identity, 93% coverage: 25:558/574 of query aligns to 18:550/568 of 8ej0A
Q1JUQ1 L-arabonate dehydratase; L-arabinonate dehydratase; EC 4.2.1.25 from Azospirillum brasilense (see paper)
35% identity, 88% coverage: 25:528/574 of query aligns to 24:529/583 of Q1JUQ1
7m3kA Crystal structure of galactonate dehydratase from brucella melitensis biovar abortus 2308
32% identity, 87% coverage: 33:534/574 of query aligns to 28:541/587 of 7m3kA
5oynA Crystal structure of d-xylonate dehydratase in holo-form (see paper)
31% identity, 90% coverage: 33:548/574 of query aligns to 33:574/589 of 5oynA
Q9A9Z2 D-xylonate dehydratase; XyDHT; Gluconate dehydratase; EC 4.2.1.82; EC 4.2.1.39 from Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15) (Caulobacter crescentus) (see 2 papers)
31% identity, 90% coverage: 33:548/574 of query aligns to 39:580/595 of Q9A9Z2
>YP_004142653.1 NCBI__GCF_000185905.1:YP_004142653.1
MDAKVISKAKLPSRYVTVGPARAPHRSYLYAMGLSAAEIAQPLVGVASCWNEAAPCNISL
MRQAQVVKKGVAAASGTPREFCTITVTDGIAMGHQGMKSSLVSREVIADSVELTMRGHCY
DALVGLAGCDKSLPGMMMAMVRLNVPSIFIYGGSILPGSYRGRQITVQDVFEAVGQHSVG
AISDDELLEIEQVACPSAGSCGAQFTANTMATVAEAIGLALPYSCGAPAPYEMRDRFNFA
SGEKIMELIARNIRPRDIVTLKALENAATVVSATGGSTNAALHLPAIAHEAGIKFDLFDV
AKIFEKTPYIADLKPGGKYVAKDMFEAGGIPLLMKTLLDHGYLHGDCMTVTGRTLAENMQ
HVVWNEHQDVVRPANRPITQTGGVVGLKGNLAPEGAIVKVAGMAELKFSGPARCFDSEEE
CFEAVTHRNYREGEVLVIRYEGPRGGPGMREMLSTTAALYGQGMGGKVALITDGRFSGAT
RGFCIGHVGPEAAVGGPIGLLRDGDVISIDAVNGTIDVALSDSELAARAKTWKARATDYQ
SGAIWKYAQTVGPARDGAVTHPGGAKETHCYADI
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory