Comparing YP_004144287.1 NCBI__GCF_000185905.1:YP_004144287.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
45% identity, 83% coverage: 21:320/361 of query aligns to 1:301/382 of 7ahhC
7aheC Opua inhibited inward facing (see paper)
45% identity, 83% coverage: 21:320/361 of query aligns to 1:301/382 of 7aheC
7ahdC Opua (e190q) occluded (see paper)
48% identity, 71% coverage: 21:278/361 of query aligns to 1:259/260 of 7ahdC
2d62A Crystal structure of multiple sugar binding transport atp-binding protein
39% identity, 71% coverage: 27:281/361 of query aligns to 11:242/375 of 2d62A
1g291 Malk (see paper)
39% identity, 71% coverage: 27:281/361 of query aligns to 8:239/372 of 1g291
Sites not aligning to the query:
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
39% identity, 64% coverage: 56:285/361 of query aligns to 12:239/240 of 4ymuJ
Sites not aligning to the query:
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
38% identity, 63% coverage: 58:283/361 of query aligns to 18:242/343 of P30750
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
38% identity, 63% coverage: 58:283/361 of query aligns to 19:243/344 of 6cvlD
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
38% identity, 63% coverage: 58:283/361 of query aligns to 19:243/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
38% identity, 63% coverage: 58:283/361 of query aligns to 19:243/344 of 3tuiC
Sites not aligning to the query:
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
39% identity, 62% coverage: 64:286/361 of query aligns to 36:252/378 of P69874
Sites not aligning to the query:
8y5iA Cryo-em structure of e.Coli spermidine transporter potd-potabc in translocation intermidiate state (see paper)
39% identity, 62% coverage: 64:286/361 of query aligns to 21:237/358 of 8y5iA
Sites not aligning to the query:
3c4jA Abc protein artp in complex with atp-gamma-s
39% identity, 64% coverage: 56:285/361 of query aligns to 14:241/242 of 3c4jA
Sites not aligning to the query:
3c41J Abc protein artp in complex with amp-pnp/mg2+
39% identity, 64% coverage: 56:285/361 of query aligns to 14:241/242 of 3c41J
Sites not aligning to the query:
2olkA Abc protein artp in complex with adp-beta-s
39% identity, 64% coverage: 56:285/361 of query aligns to 14:241/242 of 2olkA
Sites not aligning to the query:
2oljA Abc protein artp in complex with adp/mg2+
39% identity, 64% coverage: 56:285/361 of query aligns to 14:241/242 of 2oljA
Sites not aligning to the query:
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
42% identity, 64% coverage: 56:285/361 of query aligns to 13:239/241 of 4u00A
Sites not aligning to the query:
8hplC Lpqy-sugabc in state 1 (see paper)
39% identity, 61% coverage: 60:281/361 of query aligns to 16:231/384 of 8hplC
Sites not aligning to the query:
2awnB Crystal structure of the adp-mg-bound e. Coli malk (crystallized with atp-mg) (see paper)
39% identity, 65% coverage: 49:281/361 of query aligns to 5:232/374 of 2awnB