Comparing YP_004144834.1 NCBI__GCF_000185905.1:YP_004144834.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
39% identity, 62% coverage: 118:318/324 of query aligns to 14:214/214 of 4ymwC
4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
39% identity, 62% coverage: 118:318/324 of query aligns to 14:214/215 of 4ymtC
>YP_004144834.1 NCBI__GCF_000185905.1:YP_004144834.1
MLYQDNVESEVLVHKPWFVASIFAVVLAVFLMFNLTGTTFGELMRPVIGDPAQSGIYGRF
AIAFVIAIIFCLNIVLIGFVSLKVQIGVVWAELLVLFLAFFKSFNLSMPFIWENLPYLIT
QGAVTTIYISAVSLIFASIIAMIAAIAKLSSNGFAYAIASFYTSFFRGLPLLVQIYLIYL
GLPQLGIFINAVPSGVLALSLCTGAYMTEIFRAGIQSIDRGQWEASRSMGFGFGLTMRRI
ILPQALPVIIPPMGNTFISMLKDSSLVSILGVWELTFLARTLGQPTFQHMEMLITAAIIY
WIMSICLELVQSRIERHFARSKVR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory