Comparing YP_425184.1 NCBI__GCF_000013085.1:YP_425184.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 16 hits to proteins with known functional sites (download)
8hqqA Crystal structure of the glucose-binding protein sar11_0769 from "candidatus pelagibacter ubique" htcc1062 bound to glucose
57% identity, 88% coverage: 38:412/425 of query aligns to 6:385/398 of 8hqqA
5dvjA Crystal structure of galactose complexed periplasmic glucose binding protein (ppgbp) from p. Putida csv86 (see paper)
57% identity, 92% coverage: 35:425/425 of query aligns to 3:396/396 of 5dvjA
5dviA High resolution crystal structure of glucose complexed periplasmic glucose binding protein (ppgbp) from p. Putida csv86 (see paper)
57% identity, 92% coverage: 35:425/425 of query aligns to 3:396/396 of 5dviA
4r2bA Crystal structure of sugar transporter oant_3817 from ochrobactrum anthropi, target efi-510528, with bound glucose
52% identity, 92% coverage: 36:425/425 of query aligns to 6:395/395 of 4r2bA
2b3fA Thermus thermophilus glucose/galactose binding protein bound with galactose (see paper)
32% identity, 87% coverage: 37:405/425 of query aligns to 3:372/392 of 2b3fA
2b3bC Thermus thermophilus glucose/galactose binding protein with bound glucose (see paper)
32% identity, 87% coverage: 37:405/425 of query aligns to 3:372/392 of 2b3bC
2b3bA Thermus thermophilus glucose/galactose binding protein with bound glucose (see paper)
32% identity, 87% coverage: 37:405/425 of query aligns to 3:372/392 of 2b3bA
3oo6A Crystal structures and biochemical characterization of the bacterial solute receptor acbh reveal an unprecedented exclusive substrate preference for b-d-galactopyranose (see paper)
28% identity, 52% coverage: 85:305/425 of query aligns to 50:280/390 of 3oo6A
Sites not aligning to the query:
7ehqA Chitin oligosaccharide binding protein (see paper)
30% identity, 49% coverage: 83:292/425 of query aligns to 55:266/406 of 7ehqA
Sites not aligning to the query:
3vxcA Crystal structure of xylobiose-bxle complex from streptomyces thermoviolaceus opc-520
30% identity, 44% coverage: 100:284/425 of query aligns to 67:256/398 of 3vxcA
Sites not aligning to the query:
4g68A Biochemical and structural insights into xylan utilization by the thermophilic bacteriumcaldanaerobius polysaccharolyticus (see paper)
28% identity, 53% coverage: 76:302/425 of query aligns to 41:272/392 of 4g68A
Sites not aligning to the query:
7c0kA Crystal structure of a dinucleotide-binding protein of abc transporter endogenously bound to uridylyl-3'-5'-phospho-guanosine (form ii) (see paper)
26% identity, 74% coverage: 38:352/425 of query aligns to 19:321/396 of 7c0kA
Sites not aligning to the query:
7c0kB Crystal structure of a dinucleotide-binding protein of abc transporter endogenously bound to uridylyl-3'-5'-phospho-guanosine (form ii) (see paper)
26% identity, 74% coverage: 38:352/425 of query aligns to 20:322/397 of 7c0kB
Sites not aligning to the query:
7c0oB Crystal structure of a dinucleotide-binding protein (y56f) of abc transporter endogenously bound to uridylyl-3'-5'-phospho-guanosine (see paper)
26% identity, 74% coverage: 38:352/425 of query aligns to 19:321/397 of 7c0oB
Sites not aligning to the query:
6preA Sbp rafe in complex with verbascose (see paper)
24% identity, 61% coverage: 35:292/425 of query aligns to 2:267/386 of 6preA
Sites not aligning to the query:
2i58A Crystal structure of rafe from streptococcus pneumoniae complexed with raffinose
26% identity, 49% coverage: 83:292/425 of query aligns to 46:266/385 of 2i58A
Sites not aligning to the query:
>YP_425184.1 NCBI__GCF_000013085.1:YP_425184.1
MRKTTGGGFGVSCLSALALVAGLAIAAPKPAAAGGSVEVLHWWTAGGEAKAVSALKDQFE
AEGGTWIDSPVAGGGGDAAMTALRSRVIAGNPPSAVQLKGPSIQEWAAEGVVANLDDIAK
AENWDKLLPALLKSVVTYEGHYVAVPVNIHRVDWLWANPAVLAKAGVAVPTTWDEFNTAA
EALKAKGIIPLAHGGQPWQDATLFEVVVLGLGGPAFYHKALVELDDAALRGDTMVKVFDQ
MRRLRGFVDPNFSGRDWNLATAMVINGEAGFQIMGDWAKGEFLGAGKVPGKDFLCIAAPG
KGFLLNSDSLVMFDVKGADKIEGQKTLARLVLGETFQRTFNTLKGSIPARQGMDLADFDA
CAQKSQADLTKAIAADSLEPSMAHEMAVPRSVRGAIMDVVTAHFNSSESSAEAVAHLADS
IAQAR
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory