Comparing YP_425531.1 NCBI__GCF_000013085.1:YP_425531.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 11 hits to proteins with known functional sites (download)
4z9nB Abc transporter / periplasmic binding protein from brucella ovis with glutathione bound
41% identity, 87% coverage: 45:362/364 of query aligns to 4:322/324 of 4z9nB
5eyfB Crystal structure of solute-binding protein from enterococcus faecium with bound glutamate
28% identity, 60% coverage: 44:262/364 of query aligns to 1:210/243 of 5eyfB
5t0wA Crystal structure of the ancestral amino acid-binding protein anccdt- 1, a precursor of cyclohexadienyl dehydratase
27% identity, 65% coverage: 48:285/364 of query aligns to 2:223/229 of 5t0wA
4zv2A An ancestral arginine-binding protein bound to glutamine (see paper)
29% identity, 57% coverage: 55:263/364 of query aligns to 3:200/225 of 4zv2A
4zv1A An ancestral arginine-binding protein bound to arginine (see paper)
29% identity, 56% coverage: 55:259/364 of query aligns to 3:198/226 of 4zv1A
2yjpA Crystal structure of the solute receptors for l-cysteine of neisseria gonorrhoeae (see paper)
28% identity, 67% coverage: 48:292/364 of query aligns to 3:230/247 of 2yjpA
2v25A Structure of the campylobacter jejuni antigen peb1a, an aspartate and glutamate receptor with bound aspartate (see paper)
24% identity, 58% coverage: 49:258/364 of query aligns to 3:204/231 of 2v25A
1xt8B Crystal structure of cysteine-binding protein from campylobacter jejuni at 2.0 a resolution (see paper)
23% identity, 67% coverage: 47:291/364 of query aligns to 5:236/251 of 1xt8B
6h2tA Glnh bound to glu, mycobacterium tuberculosis (see paper)
28% identity, 56% coverage: 24:228/364 of query aligns to 30:218/288 of 6h2tA
6h20A Glnh bound to asn, mycobacterium tuberculosis (see paper)
28% identity, 56% coverage: 24:228/364 of query aligns to 29:217/287 of 6h20A
6h1uA Glnh bound to asp, mycobacterium tuberculosis (see paper)
28% identity, 56% coverage: 24:228/364 of query aligns to 29:217/287 of 6h1uA
>YP_425531.1 NCBI__GCF_000013085.1:YP_425531.1
MEDSVLTSRALCRGLAVVLAIGFALLSPLAGRAEQAPASPISAAEGDTLRQVRERGYLTC
GVNARLTGLGSVDPDGVWRGFDIDYCRAVAAAALGDSGRVRFVPLDIRSRLLALTSGEVD
LLSRNTTWTLERDAGQGISFVGVSLFDGPGLLAWKDLPGDDLASLPPTARLCVQSAATAA
RVLPARMAAAGLSFTILPFRSLEEARMALFTRACDGYVADRTALASLATFEAPRPDALRL
LPDLLAVEPLGPAVRDGDANWFDIARWTLFALIKAEEEGLSHDRLPAVLESTQDPELRRF
LGLDPGVGAPLGLDDAWVRRIVSQVGTYGEVFDRNLGQGSPLKLERGPNALRRDGGLMVA
PPFF
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory