Comparing YP_426425.1 NCBI__GCF_000013085.1:YP_426425.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
35% identity, 95% coverage: 22:520/527 of query aligns to 4:494/501 of P04983
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
30% identity, 43% coverage: 25:248/527 of query aligns to 4:218/240 of 4ymuJ
6z4wA Ftse structure from streptococcus pneumoniae in complex with adp (space group p 1) (see paper)
29% identity, 45% coverage: 22:257/527 of query aligns to 3:230/230 of 6z4wA
A0A0H2ZM82 Cell division ATP-binding protein FtsE from Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) (see paper)
29% identity, 45% coverage: 22:257/527 of query aligns to 3:230/230 of A0A0H2ZM82
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
30% identity, 43% coverage: 21:248/527 of query aligns to 1:218/241 of 4u00A
6z67B Ftse structure of streptococcus pneumoniae in complex with amppnp at 2.4 a resolution (see paper)
29% identity, 44% coverage: 22:253/527 of query aligns to 3:226/229 of 6z67B
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
26% identity, 43% coverage: 21:248/527 of query aligns to 16:230/378 of P69874
Sites not aligning to the query:
3c4jA Abc protein artp in complex with atp-gamma-s
27% identity, 44% coverage: 23:252/527 of query aligns to 4:224/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
27% identity, 44% coverage: 23:252/527 of query aligns to 4:224/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
27% identity, 44% coverage: 23:252/527 of query aligns to 4:224/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
27% identity, 44% coverage: 23:252/527 of query aligns to 4:224/242 of 2oljA
8wm7C Cryo-em structure of cyanobacterial nitrate/nitrite transporter nrtbcd in complex with signalling protein pii (see paper)
32% identity, 41% coverage: 37:250/527 of query aligns to 22:221/658 of 8wm7C
Sites not aligning to the query:
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
26% identity, 43% coverage: 23:248/527 of query aligns to 5:232/254 of 1g6hA
3d31A Modbc from methanosarcina acetivorans (see paper)
27% identity, 45% coverage: 22:256/527 of query aligns to 1:218/348 of 3d31A
Sites not aligning to the query:
8w9mC Cryo-em structure of the cyanobacterial nitrate transporter nrtbcd in complex with atp (see paper)
32% identity, 41% coverage: 37:252/527 of query aligns to 22:223/256 of 8w9mC
Sites not aligning to the query:
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
26% identity, 43% coverage: 23:248/527 of query aligns to 5:232/253 of 1g9xB
7z18I E. Coli c-p lyase bound to a phnk abc dimer and atp (see paper)
29% identity, 48% coverage: 21:272/527 of query aligns to 2:237/250 of 7z18I
7z15I E. Coli c-p lyase bound to a phnk/phnl dual abc dimer and adp + pi (see paper)
29% identity, 48% coverage: 21:272/527 of query aligns to 2:237/253 of 7z15I
7mdyC Lolcde nucleotide-bound
32% identity, 40% coverage: 38:247/527 of query aligns to 22:223/226 of 7mdyC
Sites not aligning to the query:
P75957 Lipoprotein-releasing system ATP-binding protein LolD; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
32% identity, 40% coverage: 38:247/527 of query aligns to 25:226/233 of P75957
>YP_426425.1 NCBI__GCF_000013085.1:YP_426425.1
MPTTASVLIRDSAPREATSPPFLDIRDVHKRFAGVKALRGVSLAIERGQIYHLLGENGCG
KSTLIKIISGAQPPDEGTLVVEGREVAGLSPIMALAAGIETVYQDLSLLPNLSVAENIAL
SQQLVASGGQLARRLDLARLKATATRALEAVNLPAGDGFLATRVDELPIATRQLIAIARV
IATDAKLVIMDEPTTALTKREVDNLIAVVEKLRAKGVAVLFVTHKLDECRTIGGRAIILR
DGRKVMEGDIADFTKKDLSHWMTGRALDDSRYREAERGGERLLDVRDLGRANAFGGVSFS
LNRGEILGVTGLLDSGRNELALALAGVCPADRGGVSLAGERVVLSQPADAIAAGIGYLPE
DRLSEGLFLEKPIADNIIASVLDRLRGRLGMLDRPLSRSRAQEMTDDLQIATPDIANPVQ
SLSGGNQQRVLIGRWLMIEPRLLVLHGPTVGVDVGSKDTIFRIIQRLAKGGMAVIIISDD
LPELLQNCDRILVMRKGRVAEVFDAEGLGEGALYRALVAEESPRSLP
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory