Comparing YP_426452.1 NCBI__GCF_000013085.1:YP_426452.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
39% identity, 95% coverage: 2:491/518 of query aligns to 3:493/501 of P04983
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
30% identity, 43% coverage: 6:230/518 of query aligns to 5:228/241 of 4u00A
3c4jA Abc protein artp in complex with atp-gamma-s
29% identity, 42% coverage: 1:218/518 of query aligns to 1:217/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
29% identity, 42% coverage: 1:218/518 of query aligns to 1:217/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
29% identity, 42% coverage: 1:218/518 of query aligns to 1:217/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
29% identity, 42% coverage: 1:218/518 of query aligns to 1:217/242 of 2oljA
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
33% identity, 40% coverage: 8:216/518 of query aligns to 22:225/378 of P69874
Sites not aligning to the query:
7mdyC Lolcde nucleotide-bound
26% identity, 43% coverage: 256:476/518 of query aligns to 2:225/226 of 7mdyC
P75957 Lipoprotein-releasing system ATP-binding protein LolD; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
26% identity, 43% coverage: 256:476/518 of query aligns to 5:228/233 of P75957
7v8iD Lolcd(e171q)e with bound amppnp in nanodiscs (see paper)
26% identity, 43% coverage: 253:476/518 of query aligns to 1:227/229 of 7v8iD
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
27% identity, 44% coverage: 4:233/518 of query aligns to 7:233/240 of 1ji0A
7arlD Lolcde in complex with lipoprotein and adp (see paper)
26% identity, 42% coverage: 256:472/518 of query aligns to 2:221/222 of 7arlD
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
26% identity, 46% coverage: 1:238/518 of query aligns to 2:254/254 of 1g6hA
P75831 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
28% identity, 42% coverage: 3:222/518 of query aligns to 4:226/648 of P75831
5lilA Structure of aggregatibacter actinomycetemcomitans macb bound to atpys (p21) (see paper)
29% identity, 38% coverage: 1:197/518 of query aligns to 1:201/615 of 5lilA
5lj7A Structure of aggregatibacter actinomycetemcomitans macb bound to atp (p21) (see paper)
29% identity, 38% coverage: 1:197/518 of query aligns to 1:201/592 of 5lj7A
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
28% identity, 41% coverage: 6:218/518 of query aligns to 4:215/240 of 4ymuJ
1b0uA Atp-binding subunit of the histidine permease from salmonella typhimurium (see paper)
29% identity, 40% coverage: 270:474/518 of query aligns to 21:230/258 of 1b0uA
Sites not aligning to the query:
P02915 Histidine/lysine/arginine/ornithine transport ATP-binding protein HisP; EC 7.4.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
29% identity, 40% coverage: 270:474/518 of query aligns to 25:234/258 of P02915
P19566 Maltose/maltodextrin import ATP-binding protein MalK; EC 7.5.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
29% identity, 42% coverage: 1:217/518 of query aligns to 1:212/369 of P19566
Sites not aligning to the query:
>YP_426452.1 NCBI__GCF_000013085.1:YP_426452.1
MAFLDVKGIRKTFPGVVALDGVDLEIELGAVHVLAGENGAGKSTLIRALTGLLPLDGGSI
HIDGRDALTDRSAFDLVAYVPQELSLFPHMSVAENLFMPFAKAGFGGRVLPYAEMNRQAG
AILERFSIKARPEQKVKSIAVSDQQLLQIARATTNKRLKVLILDEPTSSLTTQEIDRLFR
ILRQFRDNGTAIVFVSHKMEEIFELGTTVTVLRNGKTVGHRPMAAVSEPELIRLMSGDEV
QLDQLFQPACAPGETIVTVDGLCGQGFHDISFALRRGEILGFAGLVGAGRSEVMQSMFGF
KKPTGGTVLLKGRPLKLGKPSAAVEAGMLYLSEERRLHGILPVLSLRENIGISVLDQTSR
GGVISTARERGVVGEVIASYDIKASSPEKKIMFLSGGNQQKAIIGRAMARKPDVLIFDEP
TRGIDIRNKVEIYKIMKRLAEDGVAIILVSSEMAELKRCASRIITMYSGKLSGEFATATT
DTHTLVGAIIGSAQSGQPPAGAPSPVADLETGARCHVL
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory