Comparing YP_427337.1 NCBI__GCF_000013085.1:YP_427337.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P02915 Histidine/lysine/arginine/ornithine transport ATP-binding protein HisP; EC 7.4.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
64% identity, 97% coverage: 8:257/258 of query aligns to 7:257/258 of P02915
1b0uA Atp-binding subunit of the histidine permease from salmonella typhimurium (see paper)
64% identity, 97% coverage: 8:257/258 of query aligns to 3:253/258 of 1b0uA
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
54% identity, 96% coverage: 10:257/258 of query aligns to 4:240/240 of 4ymuJ
3c4jA Abc protein artp in complex with atp-gamma-s
53% identity, 96% coverage: 8:254/258 of query aligns to 1:239/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
53% identity, 96% coverage: 8:254/258 of query aligns to 1:239/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
53% identity, 96% coverage: 8:254/258 of query aligns to 1:239/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
53% identity, 96% coverage: 8:254/258 of query aligns to 1:239/242 of 2oljA
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
51% identity, 97% coverage: 8:258/258 of query aligns to 3:241/241 of 4u00A
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
36% identity, 97% coverage: 8:258/258 of query aligns to 2:246/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
36% identity, 97% coverage: 8:258/258 of query aligns to 3:247/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
36% identity, 97% coverage: 8:258/258 of query aligns to 3:247/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
36% identity, 97% coverage: 8:258/258 of query aligns to 3:247/344 of 6cvlD
2pclA Crystal structure of abc transporter with complex (aq_297) from aquifex aeolicus vf5
41% identity, 81% coverage: 8:216/258 of query aligns to 4:202/223 of 2pclA
5xu1B Structure of a non-canonical abc transporter from streptococcus pneumoniae r6 (see paper)
40% identity, 84% coverage: 8:225/258 of query aligns to 4:215/226 of 5xu1B
P75831 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
40% identity, 90% coverage: 8:238/258 of query aligns to 5:227/648 of P75831
1f3oA Crystal structure of mj0796 atp-binding cassette (see paper)
38% identity, 88% coverage: 8:234/258 of query aligns to 2:226/232 of 1f3oA
1l2tA Dimeric structure of mj0796, a bacterial abc transporter cassette (see paper)
38% identity, 88% coverage: 8:234/258 of query aligns to 2:226/230 of 1l2tA
5ws4A Crystal structure of tripartite-type abc transporter macb from acinetobacter baumannii (see paper)
37% identity, 93% coverage: 8:247/258 of query aligns to 5:239/650 of 5ws4A
8g4cB Bceabs atpgs high res tm (see paper)
35% identity, 92% coverage: 6:243/258 of query aligns to 2:237/248 of 8g4cB
5lj7A Structure of aggregatibacter actinomycetemcomitans macb bound to atp (p21) (see paper)
40% identity, 79% coverage: 8:212/258 of query aligns to 4:202/592 of 5lj7A
>YP_427337.1 NCBI__GCF_000013085.1:YP_427337.1
MAGGTIALQVKDIHKTFGRLEVLKGISLTARDGDVISILGSSGSGKSTFLRCINLLEAPD
RGEISLRGQDLALRPDRGGGLTARDARQLAAFRARIGFVFQSFNLWPHLTILENVMEAPV
HVKGLPKAQAREKAMALLAKVGIAEKRDHYPAHLSGGQQQRAAIARALAMEPEVILFDEP
TSALDPELVAEVLGVIRALAEEGRTMLIVTHEMTFARDVSSEVVFLHQGHIEEQGPPAQM
FSQPRSDRVRQFLTNHLH
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory