SitesBLAST – Find functional sites

 

SitesBLAST

Comparing YP_428662.1 NCBI__GCF_000013085.1:YP_428662.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 6 hits to proteins with known functional sites (download)

2v6tB Crystal structure of a complex of pterin-4a-carbinolamine dehydratase from toxoplasma gondii with 7,8-dihydrobiopterin (see paper)
57% identity, 78% coverage: 18:92/96 of query aligns to 19:93/100 of 2v6tB

query
sites
2v6tB
P
 
P
D
 
Q
W
 
W
T
 
H
I
 
L
T
 
T
S
 
D
A
 
G
R
 
H
T
 
L
A
 
S
L
 
I
T
 
K
R
 
R
S
 
K
F
 
F
G
 
Q
F
 
F
K
 
S
D
 
D
F
 
F
S
 
N
E
 
E
A
 
A
F
 
W
G
 
G
F
 
F
M
 
M
A
 
S
R
 
R
V
 
V
A
 
A
L
 
L
E
 
Y
A
 
A
Q
x
D
A
 
K
Q
 
V
D
|
D
H
|
H
H
|
H
P
 
P
D
 
N
W
 
W
S
 
Y
N
 
N
S
 
V
Y
 
Y
N
 
N
R
 
T
V
 
V
D
 
D
I
 
V
T
 
E
L
 
L
S
 
S
T
 
T
H
|
H
D
|
D
S
 
A
G
 
A
G
 
G
L
 
L
S
 
T
A
 
E
K
 
K
D
|
D
F
 
F
A
 
A
L
 
L
A
 
A
K
 
K
A
 
F
I
 
M
D
 
D

1dcpA Dcoh, a bifunctional protein-binding transcriptional coactivator, complexed with biopterin (see paper)
53% identity, 78% coverage: 20:94/96 of query aligns to 20:94/99 of 1dcpA

query
sites
1dcpA
W
 
W
T
 
N
I
 
E
T
 
L
S
 
E
A
 
G
R
 
R
T
 
D
A
 
A
L
 
I
T
 
F
R
 
K
S
 
Q
F
 
F
G
 
H
F
 
F
K
 
K
D
 
D
F
 
F
S
 
N
E
 
R
A
 
A
F
 
F
G
 
G
F
 
F
M
 
M
A
 
T
R
 
R
V
 
V
A
 
A
L
 
L
E
 
Q
A
 
A
Q
x
E
A
 
K
Q
 
L
D
|
D
H
|
H
H
|
H
P
 
P
D
 
E
W
 
W
S
 
F
N
 
N
S
 
V
Y
 
Y
N
 
N
R
 
K
V
 
V
D
 
H
I
 
I
T
 
T
L
 
L
S
 
S
T
|
T
H
|
H
D
x
E
S
 
C
G
 
A
G
 
G
L
 
L
S
 
S
A
 
E
K
 
R
D
|
D
F
 
I
A
 
N
L
 
L
A
 
A
K
 
S
A
 
F
I
 
I
D
 
E
R
 
Q
I
 
V

P61459 Pterin-4-alpha-carbinolamine dehydratase; PHS; 4-alpha-hydroxy-tetrahydropterin dehydratase; Dimerization cofactor of hepatocyte nuclear factor 1-alpha; DCoH; Dimerization cofactor of HNF1; Phenylalanine hydroxylase-stimulating protein; Pterin carbinolamine dehydratase; PCD; EC 4.2.1.96 from Rattus norvegicus (Rat) (see 2 papers)
53% identity, 78% coverage: 20:94/96 of query aligns to 25:99/104 of P61459

query
sites
P61459
W
 
W
T
 
N
I
 
E
T
 
L
S
 
E
A
 
G
R
 
R
T
 
D
A
 
A
L
 
I
T
 
F
R
 
K
S
 
Q
F
 
F
G
 
H
F
 
F
K
 
K
D
 
D
F
 
F
S
 
N
E
 
R
A
 
A
F
 
F
G
 
G
F
 
F
M
 
M
A
 
T
R
 
R
V
 
V
A
 
A
L
 
L
E
 
Q
A
 
A
Q
 
E
A
 
K
Q
 
L
D
 
D
H
 
H
H
 
H
P
 
P
D
 
E
W
 
W
S
 
F
N
 
N
S
 
V
Y
 
Y
N
 
N
R
 
K
V
 
V
D
 
H
I
 
I
T
 
T
L
 
L
S
 
S
T
 
T
H
 
H
D
 
E
S
x
C
G
 
A
G
 
G
L
 
L
S
 
S
A
 
E
K
 
R
D
 
D
F
 
I
A
 
N
L
 
L
A
 
A
K
 
S
A
 
F
I
 
I
D
 
E
R
 
Q
I
 
V

Sites not aligning to the query:

P61457 Pterin-4-alpha-carbinolamine dehydratase; PHS; 4-alpha-hydroxy-tetrahydropterin dehydratase; Dimerization cofactor of hepatocyte nuclear factor 1-alpha; DCoH; Dimerization cofactor of HNF1; Phenylalanine hydroxylase-stimulating protein; Pterin carbinolamine dehydratase; PCD; EC 4.2.1.96 from Homo sapiens (Human) (see 6 papers)
53% identity, 78% coverage: 20:94/96 of query aligns to 25:99/104 of P61457

query
sites
P61457
W
 
W
T
 
N
I
x
E
T
x
L
S
x
E
A
x
G
R
|
R
T
x
D
A
|
A
L
x
I
T
x
F
R
x
K
S
x
Q
F
|
F
G
x
H
F
|
F
K
|
K
D
|
D
F
|
F
S
x
N
E
x
R
A
|
A
F
|
F
G
|
G
F
|
F
M
|
M
A
x
T
R
|
R
V
|
V
A
|
A
L
|
L
E
x
Q
A
|
A
Q
x
E
A
x
K
Q
x
L
D
|
D
H
|
H
H
|
H
P
|
P
D
x
E
W
|
W
S
x
F
N
|
N
S
x
V
Y
|
Y
N
|
N
R
x
K
V
|
V
D
x
H
I
|
I
T
|
T
L
|
L
S
|
S
T
|
T
H
|
H
D
x
E
S
x
C
G
x
A
G
|
G
L
|
L
S
|
S
A
x
E
K
x
R
D
|
D
F
x
I
A
x
N
L
|
L
A
|
A
K
x
S
A
x
F
I
|
I
D
x
E
R
x
Q
I
x
V

Sites not aligning to the query:

1f93A Crystal structure of a complex between the dimerization domain of hnf-1 alpha and the coactivator dcoh (see paper)
53% identity, 78% coverage: 20:94/96 of query aligns to 24:98/103 of 1f93A

query
sites
1f93A
W
 
W
T
 
N
I
 
E
T
 
L
S
 
E
A
 
G
R
 
R
T
 
D
A
 
A
L
 
I
T
 
F
R
 
K
S
 
Q
F
 
F
G
 
H
F
 
F
K
 
K
D
 
D
F
 
F
S
x
N
E
x
R
A
 
A
F
 
F
G
|
G
F
 
F
M
 
M
A
 
T
R
|
R
V
 
V
A
 
A
L
|
L
E
 
Q
A
 
A
Q
x
E
A
 
K
Q
 
L
D
 
D
H
|
H
H
|
H
P
 
P
D
 
E
W
 
W
S
 
F
N
 
N
S
 
V
Y
 
Y
N
 
N
R
 
K
V
 
V
D
 
H
I
 
I
T
 
T
L
 
L
S
 
S
T
 
T
H
|
H
D
x
E
S
 
C
G
 
A
G
 
G
L
 
L
S
 
S
A
 
E
K
 
R
D
|
D
F
 
I
A
 
N
L
 
L
A
 
A
K
 
S
A
 
F
I
 
I
D
 
E
R
 
Q
I
 
V

Q02I31 Putative pterin-4-alpha-carbinolamine dehydratase; PHS; 4-alpha-hydroxy-tetrahydropterin dehydratase; Pterin carbinolamine dehydratase; PCD; EC 4.2.1.96 from Pseudomonas aeruginosa (strain UCBPP-PA14) (see paper)
31% identity, 91% coverage: 8:94/96 of query aligns to 25:110/118 of Q02I31

query
sites
Q02I31
P
 
P
A
 
V
L
 
L
D
 
L
R
 
R
Q
 
Q
L
 
I
A
 
-
D
 
-
H
 
-
P
 
P
D
 
D
W
 
W
T
 
N
I
 
I
T
 
E
S
 
V
-
 
R
-
 
D
A
 
G
R
 
I
T
 
M
A
 
Q
L
 
L
T
 
E
R
 
K
S
 
V
F
 
Y
G
 
L
F
 
F
K
 
K
D
 
N
F
 
F
S
 
K
E
 
H
A
 
A
F
 
L
G
 
A
F
 
F
M
 
T
A
 
N
R
 
A
V
 
V
A
 
G
L
 
E
E
 
I
A
 
S
Q
 
E
A
 
A
Q
 
E
D
 
G
H
 
H
H
 
H
P
 
P
D
 
G
W
 
L
S
 
L
N
 
T
S
 
E
Y
 
W
N
 
G
R
 
K
V
 
V
D
 
T
I
 
V
T
 
T
L
 
W
S
 
W
T
 
S
H
 
H
D
 
S
S
 
I
G
 
K
G
 
G
L
 
L
S
 
H
A
 
R
K
 
N
D
 
D
F
 
F
A
 
I
L
 
M
A
 
A
K
 
A
A
 
R
I
 
T
D
 
D
R
 
E
I
 
V

Sites not aligning to the query:

Query Sequence

>YP_428662.1 NCBI__GCF_000013085.1:YP_428662.1
MTDRLDDPALDRQLADHPDWTITSARTALTRSFGFKDFSEAFGFMARVALEAQAQDHHPD
WSNSYNRVDITLSTHDSGGLSAKDFALAKAIDRIVG

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory