Comparing YP_428806.1 NCBI__GCF_000013085.1:YP_428806.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
50% identity, 96% coverage: 8:243/246 of query aligns to 3:238/240 of 1ji0A
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
30% identity, 91% coverage: 21:243/246 of query aligns to 14:253/254 of 1g6hA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
30% identity, 91% coverage: 21:243/246 of query aligns to 14:253/253 of 1g9xB
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
34% identity, 88% coverage: 27:243/246 of query aligns to 18:235/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
34% identity, 88% coverage: 27:243/246 of query aligns to 18:235/238 of 6s8gA
Sites not aligning to the query:
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
34% identity, 88% coverage: 27:243/246 of query aligns to 18:235/235 of 6mhzA
Sites not aligning to the query:
6mbnA Lptb e163q in complex with atp (see paper)
34% identity, 88% coverage: 27:243/246 of query aligns to 19:236/241 of 6mbnA
Sites not aligning to the query:
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
34% identity, 88% coverage: 27:242/246 of query aligns to 18:234/234 of 6b89A
Sites not aligning to the query:
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
34% identity, 88% coverage: 27:242/246 of query aligns to 18:234/234 of 4p31A
Sites not aligning to the query:
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
34% identity, 87% coverage: 27:241/246 of query aligns to 18:233/233 of 6b8bA
Sites not aligning to the query:
5x40A Structure of a cbio dimer bound with amppcp (see paper)
37% identity, 92% coverage: 9:234/246 of query aligns to 2:230/280 of 5x40A
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
32% identity, 91% coverage: 21:243/246 of query aligns to 12:235/240 of 6mjpA
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
32% identity, 92% coverage: 10:236/246 of query aligns to 1:228/241 of 4u00A
Q8IUA7 ATP-binding cassette sub-family A member 9; EC 7.6.2.- from Homo sapiens (Human) (see 2 papers)
33% identity, 83% coverage: 24:228/246 of query aligns to 497:700/1624 of Q8IUA7
Sites not aligning to the query:
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
30% identity, 96% coverage: 1:235/246 of query aligns to 22:254/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
30% identity, 96% coverage: 1:235/246 of query aligns to 22:254/382 of 7aheC
Sites not aligning to the query:
P68187 Maltose/maltodextrin import ATP-binding protein MalK; EC 7.5.2.1 from Escherichia coli (strain K12) (see 5 papers)
35% identity, 91% coverage: 21:244/246 of query aligns to 13:236/371 of P68187
Sites not aligning to the query:
1q12A Crystal structure of the atp-bound e. Coli malk (see paper)
35% identity, 91% coverage: 21:244/246 of query aligns to 10:233/367 of 1q12A
3puyA Crystal structure of an outward-facing mbp-maltose transporter complex bound to amp-pnp after crystal soaking of the pretranslocation state (see paper)
35% identity, 91% coverage: 21:244/246 of query aligns to 12:235/371 of 3puyA
3puxA Crystal structure of an outward-facing mbp-maltose transporter complex bound to adp-bef3 (see paper)
35% identity, 91% coverage: 21:244/246 of query aligns to 12:235/371 of 3puxA
>YP_428806.1 NCBI__GCF_000013085.1:YP_428806.1
MTDRLSPSTPLLAIRGLDVRYGPVVALSDVSIDVHEGEAVALIGANGAGKSTLLRTISGL
LRPTAGDILYAGDSVRGLSAEAILRRGIAHCPEGRRLFGSLTVEENLRLGAATRRDAKAV
ARDLAHIESLFPILAERRKQVSGTLSGGEQQMVALARAVMAAPKVLMLDEPSLGVAPLIT
KMIFSRLAEMKAAGTTLLLVEQNVKLALSLADRAYVLRTGKVALSGAAAELADDPRVFQA
YLGATE
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory