SitesBLAST – Find functional sites

 

SitesBLAST

Comparing b4602 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

A5A618 Uncharacterized protein YnhF from Escherichia coli (strain K12) (see paper)
100% identity, 100% coverage: 1:29/29 of query aligns to 1:29/29 of A5A618

query
sites
A5A618
M
|
M
S
 
S
T
 
T
D
 
D
L
 
L
K
 
K
F
 
F
S
 
S
L
 
L
V
 
V
T
 
T
T
 
T
I
 
I
I
 
I
V
 
V
L
 
L
G
 
G
L
 
L
I
 
I
V
 
V
A
 
A
V
 
V
G
 
G
L
 
L
T
 
T
A
 
A
A
 
A
L
 
L
H
 
H

Query Sequence

>b4602
MSTDLKFSLVTTIIVLGLIVAVGLTAALH

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SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory