Sites on a Tree

 

Information about 10307987_154_329

Unaligned length: 176

Alignment length: 716

Description in the alignment: single domain, from Pirellula staleyi DSM 6068

Link (from the uploaded table)

No known functional residues in BioLiP or SwissProt.

Sequence analysis tools

Find papers: PaperBLAST

Find functional residues: SitesBLAST

Search for conserved domains

Find the best match in UniProt

Compare to protein structures

Predict transmenbrane helices: Phobius

Predict protein localization: PSORTb

Find homologs in fast.genomics

Fitness BLAST: loading...

Sequence

>10307987_154_329
RILFSGNETSAFEKAKVTPDGLLLAGFQTKQPVGDFRLHVEFRTPYMPYAKGQARGNSGV
YIQTRYEVQVLDSFGLEGIENECGSLYRQKRPDLNMCLPPLAWQTYDIYFSQPKWSADGK
TKLANARITVIHNGVPVHWHREIIAKTGGGKVEAPTLLPINFQDHGNPVAFRNLWI

Aligned sequence

>10307987_154_329
------------------------------------------------------------
------------------------------------------------------------
-----------------------------RILFS---------GN--ET-SA-------F
E---KA-----------K------------------------------------VTPD-G
---------------------------LLL------------------------------
A-GFQT-----K-----Q--PV-G-DFRLHVEFRTPYMP-------YAKGQA-RG-----
------------------------NSGVYIQTR---------------------------
---------------Y-EVQVLD------SFGL---------------------EGIENE
CGSLY----------------------------------------------RQKR-----
---PD--LNMCLPPLAWQTYDI--YF-S-QPKWSADGK--TKLANARIT--V-IHN-GVP
VHWHREIIAKTGGGKV-----------------------EAPTLLPINFQ--DHG-----
-------N--------------------PVA--FRNLWI-----------------

Back to tree

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory