Sites on a Tree

 

Information about 10359233_59_249

Unaligned length: 191

Alignment length: 716

Description in the alignment: tandem domain, from Coraliomargarita akajimensis DSM 45221

Link (from the uploaded table)

No known functional residues in BioLiP or SwissProt.

Sequence analysis tools

Find papers: PaperBLAST

Find functional residues: SitesBLAST

Search for conserved domains

Find the best match in UniProt

Compare to protein structures

Predict transmenbrane helices: Phobius

Predict protein localization: PSORTb

Find homologs in fast.genomics

Fitness BLAST: loading...

Sequence

>10359233_59_249
GFVSLYNGKDLEGWTPRGGACTFEARGEVIVGTCVQGSPSTYLSTDKDYGDFIFTAELNW
VVDGNSGIMFRAQSQAKPDKEFEHVFGPQCEMEGFRPNSGQMRGWSGGIYGQGYAAWIYP
LWLDAHKEARAALKQGWNRITIQAIGDTVKTWVNGVPAANWNDSKFTKGFIGLQVHSGHQ
GEIHFRNLKIK

Aligned sequence

>10359233_59_249
------------------------------------------------------------
------------------------------------------------------------
----------------------------------GFVSLY-N-GK--DL-EG-------W
T---PRGGACT--FE----------------------------------------ARG-E
---------------------------VIV---------------------GTCVQGSPS
T-YLST-----D-----K--DY-G-DFIFTAELNW---------------VV-DG-----
------------------------NSGIMFRAQS-------------------------Q
AKPDKE---FEHVFGP-QCEMEG------FRPN--------------------SGQMRGW
SGGIYGQGYA-----------------------------------AWIYPLWLDA-----
---HK--EARAALKQGWNRITI--QA-I-GDT---------------VK--T-WVN-GVP
AANWNDSKF---------------------------------TKGFIGLQ--VHSG----
-----HQG--------------------EIH--FRNLKIK----------------

Back to tree

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory