Sites on a Tree

 

Information about 11129631_48_250

Unaligned length: 203

Alignment length: 716

Description in the alignment: single domain, from Aquiflexum balticum BA160, DSM 16537

Link (from the uploaded table)

No known functional residues in BioLiP or SwissProt.

Sequence analysis tools

Find papers: PaperBLAST

Find functional residues: SitesBLAST

Search for conserved domains

Find the best match in UniProt

Compare to protein structures

Predict transmenbrane helices: Phobius

Predict protein localization: PSORTb

Find homologs in fast.genomics

Fitness BLAST: loading...

Sequence

>11129631_48_250
GFISIFNGENLDGWHISKTNHHGTMGNFYIENGALVMKQYPYGQGGIILTDKKYQDFELQ
LEFKGHPGTNGGIFLRSSESGSAYQLELAGDGERGTGNLFGELLRTTINAKIENLDEVWN
KGDWNSFLIRITGEIPKVSLWINGIHMWDAEGQRNDLIGDVTAGMIAFQLHWSATLQPVP
GGRCCDFSWKPDAAHSFRNIKIK

Aligned sequence

>11129631_48_250
------------------------------------------------------------
------------------------------------------------------------
----------------------------------GFISIF-N-GE--NL-DG-------W
H---ISKTNHH--GTMGN-----------------------------------FYIEN-G
---------------------------ALV---------------------MKQYPYGQG
G-IILT-----D-----K--KY-Q-DFELQLEFKG---------------HP-GT-----
------------------------NGGIFLRSS---------------------------
----------ESGSAY-QLELAG------DGER--------------------------G
TGNLFGELL--------------------------------------RTTINAKI-----
---EN--LDEVWNKGDWNSFLI--RI-T-GEIP-------------KVS--L-WIN-GIH
MWDAEGQRNDLIGD---------------------------VTAGMIAFQ--LHW-----
-------SATLQPVPGGRCCDFSWKPDAAHS--FRNIKIK----------------

Back to tree

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory