Sites on a Tree

 

Information about 11294790_78_245

Unaligned length: 168

Alignment length: 716

Description in the alignment: tandem domain, from Planctomyces brasiliensis DSM 5305

Link (from the uploaded table)

No known functional residues in BioLiP or SwissProt.

Sequence analysis tools

Find papers: PaperBLAST

Find functional residues: SitesBLAST

Search for conserved domains

Find the best match in UniProt

Compare to protein structures

Predict transmenbrane helices: Phobius

Predict protein localization: PSORTb

Find homologs in fast.genomics

Fitness BLAST: loading...

Sequence

>11294790_78_245
GWIALFDNETLFGWTANSNANWAVADEAVGADEGEAGLLLTDVRFADFELALEFNASPGS
NGGVFIRCVEDVPDPHNQCYEINIADGHPEGFDSGSIVFHQAGGAEFNTTDDAWHSMTIA
AAGNLITVLVDGKQILEYTDESEDWLKAGKIGIQRRDGKLKYRNIRLK

Aligned sequence

>11294790_78_245
------------------------------------------------------------
------------------------------------------------------------
----------------------------------GWIALF-D-NE--TL-FG-------W
T---AN----S---NANW------------------------------------AVAD-E
---------------------------AVG------------------------ADEGEA
G-LLLT-----D-----V--RF-A-DFELALEFNA---------------SP-GS-----
------------------------NGGVFIRCV---------------------------
--EDVP---DPHNQCY-EINIAD------GHPE------------------------GFD
SGSIV----------------------------------------------FHQA-----
---GG--AEFNTTDDAWHSMTI--AA-A-GNL---------------IT--V-LVD-GKQ
ILEYTDESEDWL------------------------------KAGKIGIQ--RRD-----
-------G--------------------KLK--YRNIRLK----------------

Back to tree

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory