Sites on a Tree

 

Information about 2225943_20_213

Unaligned length: 194

Alignment length: 716

Description in the alignment: single domain, from Solibacter usitatus Ellin6076

Link (from the uploaded table)

No known functional residues in BioLiP or SwissProt.

Sequence analysis tools

Find papers: PaperBLAST

Find functional residues: SitesBLAST

Search for conserved domains

Find the best match in UniProt

Compare to protein structures

Predict transmenbrane helices: Phobius

Predict protein localization: PSORTb

Find homologs in fast.genomics

Fitness BLAST: loading...

Sequence

>2225943_20_213
IKLWNGKNLDGWSRLTRHEGEADHAPGFKIANGLLITDPNAPEDDIWYPKEKIGNATIRV
VYKVDSERANSGIFIRIPEPPKSEDDAINKGIEVQIDQGDDDWHCTGVLYSMVKAKARPS
KPIGEWNTMEIKMQGPRTIVTVNGVLVTDYDGVTPAPEKVKSYEPDRGRRPDTGFIAVQH
HSGKGVVTFKEITL

Aligned sequence

>2225943_20_213
------------------------------------------------------------
------------------------------------------------------------
------------------------------------IKLW-N-GK--NL-DG-------W
S---RLTRHEG---EADHAP--------------------------------GFKIAN-G
---------------------------LLI-----------------------TDPNAPE
D-DIWY-----P-----K-EKI-G-NATIRVVYKV--------------DSE-RA-----
------------------------NSGIFIRIPE--------------------------
PPKSED---DAINKGI-EVQIDQ------GDDD------------------------WHC
TGVLY----------------------------------------------SMVK-----
---AK--ARPSKPIGEWNTMEI--KM-Q-GPR---------------TI--V-TVN-GVL
VTDYDGVTPAPEKVKSYEP-----------------DRGRRPDTGFIAVQ--HHSG----
------KG--------------------VVT--FKEIT--L---------------

Back to tree

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory