Sites on a Tree

 

Information about 3722502_28_193

Unaligned length: 166

Alignment length: 716

Description in the alignment: with other domain, from Parabacteroides distasonis ATCC 8503

Link (from the uploaded table)

No known functional residues in BioLiP or SwissProt.

Sequence analysis tools

Find papers: PaperBLAST

Find functional residues: SitesBLAST

Search for conserved domains

Find the best match in UniProt

Compare to protein structures

Predict transmenbrane helices: Phobius

Predict protein localization: PSORTb

Find homologs in fast.genomics

Fitness BLAST: loading...

Sequence

>3722502_28_193
VDHNAWKTTGVVVIQNDVLTLAGSNARALLNDGKGYTNFELDMDVRTTTGGKGYIGIHTD
ATDRKGYRIALNNDREDPVWWRMTGSLVSVRNLTKSFVKENEWFKMNIRVEGRLIRVRIN
GETVVEYIEPSKPFRLKENAKALLSQGTISLVGTGRGNLQFKNISL

Aligned sequence

>3722502_28_193
------------------------------------------------------------
------------------------------------------------------------
-------------------------------VDH----------------NA-------W
K---TT---------GVV------------------------------------VIQN-D
---------------------------VLT------------------------LAGSNA
R-ALLN-----D----GK--GY-T-NFELDMDVRT---------------TT-GG-----
------------------------KGYIGIHTD---------------------------
---------ATDRKGY-RIALNN------DRED---------------------PVWWRM
TGSLV-----------------------------------------------SVR-----
---NL--TKSFVKENEWFKMNI--RV-E-GRL---------------IR--V-RIN-GET
VVEYIEPSKPFRLKENA---------------------KALLSQGTISLV--GTG-----
------RG--------------------NLQ--FKNIS--L---------------

Back to tree

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory