Sites on a Tree

 

Information about 4911270_310_467

Unaligned length: 158

Alignment length: 716

Description in the alignment: with other domain, from Gemmata obscuriglobus UQM 2246

Link (from the uploaded table)

No known functional residues in BioLiP or SwissProt.

Sequence analysis tools

Find papers: PaperBLAST

Find functional residues: SitesBLAST

Search for conserved domains

Find the best match in UniProt

Compare to protein structures

Predict transmenbrane helices: Phobius

Predict protein localization: PSORTb

Find homologs in fast.genomics

Fitness BLAST: loading...

Sequence

>4911270_310_467
TVELFNGKDLTGWGYMKGATFEGFDGKTESSDKRYSAKDGVLVVNPGKGLNQLWTAAKFP
TDFELRLEFRAGVNADSGLFVRGPQLQVRDYLVAGPYKNLKKYKPQDWNEIVVVVRGEVA
HCTCNGEVLNDKMKVPATGPIGLEADRGQMEYRNIRLK

Aligned sequence

>4911270_310_467
------------------------------------------------------------
------------------------------------------------------------
---------------------------------T--VELF-N-GK--DL-TG-------W
G---YM-KGAT--FEG-FDGKTE-------------------------SSDKRYSAKD-G
---------------------------VLV-----------------------VNPGKGL
N-QLWT-----A-----A--KF-PTDFELRLEFRA---------------GV-NA-----
------------------------DSGLFVRGP---------------------------
-----------------QLQVRD-----------------------------------YL
VAGPY-------------------------------------------------------
----K--NLKKYKPQDWNEIVV--VV-R-GEV---------------AH--C-TCN-GEV
LNDKMKVPA----------------------------------TGPIGLE--ADR-----
-------G--------------------QME--YRNIRLK----------------

Back to tree

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory