Sites on a Tree

 

Information about 5646913_28_225

Unaligned length: 198

Alignment length: 716

Description in the alignment: with other domain, from Opitutus terrae PB90-1

Link (from the uploaded table)

No known functional residues in BioLiP or SwissProt.

Sequence analysis tools

Find papers: PaperBLAST

Find functional residues: SitesBLAST

Search for conserved domains

Find the best match in UniProt

Compare to protein structures

Predict transmenbrane helices: Phobius

Predict protein localization: PSORTb

Find homologs in fast.genomics

Fitness BLAST: loading...

Sequence

>5646913_28_225
GWESLFDGRSLAGWRAAEHPGSFRVEDGAIVADGPRAHLFYLGGDGAAQFENFEFSIEVK
AMPHANSGVYFLARWADSGWPTQAGFEAQVNNTQPPFEVGAPGAQNLYRENKKTGSLYGV
RNLYKALVRDGEWFTMTITVRRPRVQIHVNDVLTADYIEPANLGEPGGRQVNRLAPGTFA
LQCHDEQSRVYFRNIRVR

Aligned sequence

>5646913_28_225
------------------------------------------------------------
------------------------------------------------------------
----------------------------------GWESLF-D-GR--SL-AG-------W
R---AA---EH---PGSF------------------------------------RVED-G
---------------------------AIV-------------------------ADGPR
A-HLFYLGGDGA-----A--QF-E-NFEFSIEVKA---------------MP-HA-----
------------------------NSGVYFLAR---------------------------
-WADSG---WPTQAGF-EAQVNN------TQPPFEVGA----------PGAQNLYRENKK
TGSLY-----------------------------------------------GVR-----
---NL--YKALVRDGEWFTMTI--TV-R-RPR---------------VQ--I-HVN-DVL
TADYIEPANLGEPGGRQ---------------------VNRLAPGTFALQ--CHDE----
------QS--------------------RVY--FRNIRVR----------------

Back to tree

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory