Information about 6005680_33_220

Unaligned length: 188

Alignment length: 716

Description in the alignment: single domain, from Verrucomicrobium spinosum DSM 4136

Link (from the uploaded table)

No known functional residues in BioLiP or SwissProt.

Sequence analysis tools

Find papers: PaperBLAST

Find functional residues: SitesBLAST

Search for conserved domains

Find the best match in UniProt

Compare to protein structures

Predict transmenbrane helices: Phobius

Predict protein localization: PSORTb

Find homologs in fast.genomics

Fitness BLAST: loading...

Sequence

>6005680_33_220
GFTSLFDGSTFAGWKAETATGYQAEKGVLRCTPEGKHLVSEKTYGNFHLKFEFKLSEGAN
NGMGIRCDDIKPGSKAAPHLNGMEIQIIDANVPKHATIKDWQHHGSIYGVVPARREGMKP
VGEWNTEEIIAQGTRVKVILNGVTIVDADLATQKPIDGHEHPGLLNKEGHLVICGHKDPV
EFKNLQIK

Aligned sequence

>6005680_33_220
------------------------------------------------------------
------------------------------------------------------------
----------------------------------GFTSLF-D-GS--TF-AG-------W
K---AETATG-------Y------------------------------------QAEK-G
---------------------------VLR-------------------------CTPEG
K-HLVS-----E-----K--TY-G-NFHLKFEFKL---------------SE-GA-----
------------------------NNGMGIRCDD-------------------------I
KPGSKA---APHLNGM-EIQIID------ANVPKH-----------------ATIKDWQH
HGSIY----------------------------------------------GVVP-----
---AR--REGMKPVGEWNTEEI--IA-Q-GTR---------------VK--V-ILN-GVT
IVDADLATQKPIDGHEHP--------------------GLLNKEGHLVIC--GHK-----
-------D--------------------PVE--FKNLQIK----------------

Back to tree