Sites on a Tree

 

Download tree, alignment (240 x 716), positions, or descriptions, or see permanent link to this page, or start over.

Upload descriptions:
The table should be tab-delimited with the sequence identifier in the 1st column and the description in the 2nd column. Optionally, add fields named color and URL.

No functional positions to show from BioLiP or SwissProt.

Or see filtered positions, see all positions, or choose positions.

Comment: DUF1080 is a family of hydrolases and includes putative 3-ketoglycoside hydrolases. The putative active site was identified from the structure of BT2157 (PDB:3osd). In the tree, BT2157 and other 3-ketoglycoside hydrolases are colored green, and endoglucanase THTE_1561 is in red. These members of DUF1080 were taken from MicrobesOnline (using hits to PFam PF06439.11 with 80 bits or higher), clustered at 60% identity to reduce the number of sequences, and aligned using hmmalign.

Find sequence pattern:

Highlight proteins:

0.905 0.451 0.427 0.957 5635396_34_225: single domain, from Phenylobacterium zucineum HLK1 5650395_26_219: single domain, from Opitutus terrae PB90-1 0.840 4592619_38_216: single domain, from Planctomyces maris DSM 8797 0.945 2221277_10_210: single domain, from Solibacter usitatus Ellin6076 2224300_9_241: single domain, from Solibacter usitatus Ellin6076 0.854 0.989 6254732_35_232: single domain, from Chthoniobacter flavus Ellin428 0.945 557204_55_252: single domain, from Pirellula sp. 1 4590561_54_263: with other domain, from Planctomyces maris DSM 8797 0.987 2107363_45_249: single domain, near sugar dehydrogenase, from Gramella forsetii KT0803 2766526_24_229: single domain, from Flavobacteriales bacterium HTCC2170 0.747 0.932 0.920 0.259 0.802 0.820 11127178_250_458: tandem domain, near sugar dehydrogenase, from Aquiflexum balticum BA160, DSM 16537 11135123_241_454: tandem domain, from Haliscomenobacter hydrossis O, DSM 1100 0.324 10267694_39_236: single domain, near sugar dehydrogenase, from Spirosoma linguale DSM 74 0.859 11144788_324_528: with other domain, from Runella slithyformis LSU4, DSM 19594 11231190_33_234: single domain, from Cyclobacterium marinum DSM 745 11142916_35_241: single domain, near sugar dehydrogenase, from Runella slithyformis LSU4, DSM 19594 0.710 6248949_36_232: single domain, from Chthoniobacter flavus Ellin428 0.929 6248947_52_255: single domain, from Chthoniobacter flavus Ellin428 6254960_116_292: single domain, from Chthoniobacter flavus Ellin428 0.936 6002492_41_212: single domain, from Verrucomicrobium spinosum DSM 4136 0.879 10356681_30_214: single domain, from Coraliomargarita akajimensis DSM 45221 10359233_256_442: tandem domain, from Coraliomargarita akajimensis DSM 45221 0.958 0.953 11036482_44_240: single domain, from Niastella koreensis GR20-10, DSM 17620 0.953 0.948 11129142_59_261: single domain, near sugar dehydrogenase, from Aquiflexum balticum BA160, DSM 16537 11227662_34_258: single domain, near sugar dehydrogenase, from Cyclobacterium marinum DSM 745 0.866 0.672 3722681_42_255: single domain, near sugar dehydrogenase, from Parabacteroides distasonis ATCC 8503 11000384_42_248: tandem domain, from Alistipes finegoldii AHN 2437, DSM 17242 7460989_37_237: single domain, from Pedobacter heparinus DSM 2366 10265754_21_224: single domain, from Spirosoma linguale DSM 74 1 /site single domain, from Phenylobacterium zucineum HLK1 5635396_34_225 single domain, from Phenylobacterium zucineum HLK1 single domain, from Opitutus terrae PB90-1 5650395_26_219 single domain, from Opitutus terrae PB90-1 single domain, from Planctomyces maris DSM 8797 4592619_38_216 single domain, from Planctomyces maris DSM 8797 single domain, from Solibacter usitatus Ellin6076 2221277_10_210 single domain, from Solibacter usitatus Ellin6076 single domain, from Solibacter usitatus Ellin6076 2224300_9_241 single domain, from Solibacter usitatus Ellin6076 single domain, from Chthoniobacter flavus Ellin428 6254732_35_232 single domain, from Chthoniobacter flavus Ellin428 single domain, from Pirellula sp. 1 557204_55_252 single domain, from Pirellula sp. 1 with other domain, from Planctomyces maris DSM 8797 4590561_54_263 with other domain, from Planctomyces maris DSM 8797 single domain, near sugar dehydrogenase, from Gramella forsetii KT0803 2107363_45_249 single domain, near sugar dehydrogenase, from Gramella forsetii KT0803 single domain, from Flavobacteriales bacterium HTCC2170 2766526_24_229 single domain, from Flavobacteriales bacterium HTCC2170 tandem domain, near sugar dehydrogenase, from Aquiflexum balticum BA160, DSM 16537 11127178_250_458 tandem domain, near sugar dehydrogenase, from Aquiflexum balticum BA160, DSM 16537 tandem domain, from Haliscomenobacter hydrossis O, DSM 1100 11135123_241_454 tandem domain, from Haliscomenobacter hydrossis O, DSM 1100 single domain, near sugar dehydrogenase, from Spirosoma linguale DSM 74 10267694_39_236 single domain, near sugar dehydrogenase, from Spirosoma linguale DSM 74 with other domain, from Runella slithyformis LSU4, DSM 19594 11144788_324_528 with other domain, from Runella slithyformis LSU4, DSM 19594 single domain, from Cyclobacterium marinum DSM 745 11231190_33_234 single domain, from Cyclobacterium marinum DSM 745 single domain, near sugar dehydrogenase, from Runella slithyformis LSU4, DSM 19594 11142916_35_241 single domain, near sugar dehydrogenase, from Runella slithyformis LSU4, DSM 19594 single domain, from Chthoniobacter flavus Ellin428 6248949_36_232 single domain, from Chthoniobacter flavus Ellin428 single domain, from Chthoniobacter flavus Ellin428 6248947_52_255 single domain, from Chthoniobacter flavus Ellin428 single domain, from Chthoniobacter flavus Ellin428 6254960_116_292 single domain, from Chthoniobacter flavus Ellin428 single domain, from Verrucomicrobium spinosum DSM 4136 6002492_41_212 single domain, from Verrucomicrobium spinosum DSM 4136 single domain, from Coraliomargarita akajimensis DSM 45221 10356681_30_214 single domain, from Coraliomargarita akajimensis DSM 45221 tandem domain, from Coraliomargarita akajimensis DSM 45221 10359233_256_442 tandem domain, from Coraliomargarita akajimensis DSM 45221 single domain, from Niastella koreensis GR20-10, DSM 17620 11036482_44_240 single domain, from Niastella koreensis GR20-10, DSM 17620 single domain, near sugar dehydrogenase, from Aquiflexum balticum BA160, DSM 16537 11129142_59_261 single domain, near sugar dehydrogenase, from Aquiflexum balticum BA160, DSM 16537 single domain, near sugar dehydrogenase, from Cyclobacterium marinum DSM 745 11227662_34_258 single domain, near sugar dehydrogenase, from Cyclobacterium marinum DSM 745 single domain, near sugar dehydrogenase, from Parabacteroides distasonis ATCC 8503 3722681_42_255 single domain, near sugar dehydrogenase, from Parabacteroides distasonis ATCC 8503 tandem domain, from Alistipes finegoldii AHN 2437, DSM 17242 11000384_42_248 tandem domain, from Alistipes finegoldii AHN 2437, DSM 17242 single domain, from Pedobacter heparinus DSM 2366 7460989_37_237 single domain, from Pedobacter heparinus DSM 2366 single domain, from Spirosoma linguale DSM 74 10265754_21_224 single domain, from Spirosoma linguale DSM 74 download SVG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory