Sites on a Tree

 

Download tree, alignment (240 x 716), positions, or descriptions, or see permanent link to this page, or start over.

Upload descriptions:
The table should be tab-delimited with the sequence identifier in the 1st column and the description in the 2nd column. Optionally, add fields named color and URL.

No functional positions to show from BioLiP or SwissProt.

Or see filtered positions, see all positions, or choose positions.

Comment: DUF1080 is a family of hydrolases and includes putative 3-ketoglycoside hydrolases. The putative active site was identified from the structure of BT2157 (PDB:3osd). In the tree, BT2157 and other 3-ketoglycoside hydrolases are colored green, and endoglucanase THTE_1561 is in red. These members of DUF1080 were taken from MicrobesOnline (using hits to PFam PF06439.11 with 80 bits or higher), clustered at 60% identity to reduce the number of sequences, and aligned using hmmalign.

Find sequence pattern:

Highlight proteins:

0.915 7058297_78_271: single domain, from Gemmatimonas aurantiaca T-27 0.835 3558251_5_190: single domain, from Pseudomonas stutzeri A1501 5650184_80_251: single domain, from Opitutus terrae PB90-1 0.5 /site single domain, from Gemmatimonas aurantiaca T-27 7058297_78_271 single domain, from Gemmatimonas aurantiaca T-27 single domain, from Pseudomonas stutzeri A1501 3558251_5_190 single domain, from Pseudomonas stutzeri A1501 single domain, from Opitutus terrae PB90-1 5650184_80_251 single domain, from Opitutus terrae PB90-1 download SVG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory